CX298505

Overview
NameCX298505
Unique NameCX298505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4362 contig Ccv1_Contig4362:964..1670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298505 vs. ExPASy Swiss-Prot
Match: P2C64_ARATH (Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.183e-74
Identity = 131/169 (77.51%), Postives = 153/169 (90.53%), Query Frame = 2
Query:    5 EGLIQVSRSIGDVYLKKAEYNREPLYAKFRLREPFRKPILSSEPSISAHELQPFDQFLIFASDGLWEHLSNQDAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRASSVRGPSLSVRGGGVNMPSKTLAPCATPVE 511
            +G+IQVSRSIGDVYLK++E+NREPLYAKFRLR PF KP+LS+EP+I+ H L+P DQF+I ASDGLWEH+SNQ+AVDIVQNHPR+G A+RLVK ALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVF D++LVSR S +RGP++SVRG GVN+P  TLAPC TP +
Sbjct:  225 KGIIQVSRSIGDVYLKRSEFNREPLYAKFRLRSPFSKPLLSAEPAITVHTLEPHDQFIICASDGLWEHMSNQEAVDIVQNHPRNGIAKRLVKVALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFFDTNLVSRGSMLRGPAVSVRGAGVNLPHNTLAPCTTPTQ 393          
BLAST of CX298505 vs. ExPASy Swiss-Prot
Match: P2C60_ORYSJ (Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.136e-74
Identity = 138/166 (83.13%), Postives = 152/166 (91.57%), Query Frame = 2
Query:    5 EGLIQVSRSIGDVYLKKAEYNREPLYAKFRLREPFRKPILSSEPSISAHELQPFDQFLIFASDGLWEHLSNQDAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRASSVRGPSLSVRGGGVNMPSKTLAPCAT 502
            +GLIQV RSIGD YLK++E+NREPLYAKFRLREPF KPILSSEPSIS   LQP DQFLIFASDGLWEHL+NQ+AVDIV + PR+GSARRL+KAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDS LVSRAS+ RGPS+S+RGGGVN+ S TLAP A+
Sbjct:  225 KGLIQVCRSIGDAYLKRSEFNREPLYAKFRLREPFHKPILSSEPSISVQPLQPHDQFLIFASDGLWEHLTNQEAVDIVHSSPRNGSARRLIKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSSLVSRASTYRGPSVSLRGGGVNLRSNTLAPYAS 390          
BLAST of CX298505 vs. ExPASy Swiss-Prot
Match: P2C28_ORYSJ (Probable protein phosphatase 2C 28 OS=Oryza sativa subsp. japonica GN=Os03g0137200 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.346e-72
Identity = 130/173 (75.14%), Postives = 158/173 (91.33%), Query Frame = 2
Query:    5 EGLIQVSRSIGDVYLKKAEYNREPLYAKFRLREPFRKPILSSEPSISAHELQPFDQFLIFASDGLWEHLSNQDAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRASSVRGPSLSVRGGGVNMPSKTLAPCATPVELSTT 523
            +GLIQ+SRSIGDVYLK+ EYNREPL++KFRLRE F++PILSSEP+I+ H++QP D F+IFASDGLWEHLSNQ+AVD+VQN+PR+G ARRLVK A+QEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDS+ +S+A+  RGPS+S+RGGGV +P+ +LAP +TP  LS+T
Sbjct:  226 KGLIQISRSIGDVYLKRPEYNREPLHSKFRLRETFKRPILSSEPAIAVHQIQPNDHFVIFASDGLWEHLSNQEAVDLVQNNPRNGIARRLVKVAMQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNAISKANWSRGPSVSLRGGGVTLPANSLAPFSTPTVLSST 398          
BLAST of CX298505 vs. ExPASy Swiss-Prot
Match: P2C79_ARATH (Probable protein phosphatase 2C 79 OS=Arabidopsis thaliana GN=At5g66080 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.027e-69
Identity = 123/159 (77.36%), Postives = 148/159 (93.08%), Query Frame = 2
Query:    5 EGLIQVSRSIGDVYLKKAEYNREPLYAKFRLREPFRKPILSSEPSISAHELQPFDQFLIFASDGLWEHLSNQDAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRASSVRGPSLSVRGGGVNMPSK 481
            +G+IQVSRSIGDVYLKK+E+N+EPLY K+RLREP ++PILS EPSI+ H+LQP DQFLIFASDGLWE LSNQ+AV+IVQNHPR+G ARRLVKAALQEAAKKREMRYSDL KI+RGVRRHFHDDITV+V+FLD++L+SRASS++ PS+S+RGGG+ +P K
Sbjct:  226 KGIIQVSRSIGDVYLKKSEFNKEPLYTKYRLREPMKRPILSWEPSITVHDLQPDDQFLIFASDGLWEQLSNQEAVEIVQNHPRNGIARRLVKAALQEAAKKREMRYSDLNKIERGVRRHFHDDITVVVLFLDTNLLSRASSLKTPSVSIRGGGITLPKK 384          
BLAST of CX298505 vs. ExPASy Swiss-Prot
Match: P2C46_ARATH (Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.103e-66
Identity = 120/159 (75.47%), Postives = 144/159 (90.57%), Query Frame = 2
Query:    5 EGLIQVSRSIGDVYLKKAEYNREPLYAKFRLREPFRKPILSSEPSISAHELQPFDQFLIFASDGLWEHLSNQDAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRASSVRGPSLSVRGGGVNMPSK 481
            +GLIQ+SRSIGDVYLKKAE+N+EPLY K+R+REPF++PILS EP+I+ HE+QP D+FLIFASDGLWE +SNQ+AVDIVQNHPR+G ARRLVK ALQEAAKKREMRYSDLKKI+RGVRRHFHDDITV+++FLD++ V   SSV+GP LS+RGGG+  P K
Sbjct:  223 KGLIQISRSIGDVYLKKAEFNKEPLYTKYRIREPFKRPILSGEPTITEHEIQPQDKFLIFASDGLWEQMSNQEAVDIVQNHPRNGIARRLVKMALQEAAKKREMRYSDLKKIERGVRRHFHDDITVVIIFLDTNQV---SSVKGPPLSIRGGGMTFPKK 378          
BLAST of CX298505 vs. ExPASy Swiss-Prot
Match: P2C72_ORYSJ (Probable protein phosphatase 2C 72 OS=Oryza sativa subsp. japonica GN=Os10g0544900 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.718e-65
Identity = 118/167 (70.66%), Postives = 150/167 (89.82%), Query Frame = 2
Query:    5 EGLIQVSRSIGDVYLKKAEYNREPLYAKFRLREPFRKPILSSEPSISAHELQPFDQFLIFASDGLWEHLSNQDAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRASSVRGPSLSVRGGGVNMPSKTLAPCATP 505
            +G+IQ++RSIGDVYLKK E+NREPL++KFRL+E FR+P+LSSEP+I  H+LQ  DQF+IFASDGLWEH+SNQ+AVD+VQ++PR+G ARRLVKAA+Q+AAKKREMRYSDLKKIDRGVRRHFHDDITV+VVF DS+ ++ A+  R PS+S+RGGGV +P+ +LAP + P
Sbjct:  227 KGIIQITRSIGDVYLKKPEFNREPLHSKFRLQETFRRPLLSSEPAIVVHQLQTTDQFIIFASDGLWEHISNQEAVDLVQHNPRNGIARRLVKAAMQQAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFFDSNAITTANWSR-PSVSLRGGGVTLPANSLAPFSVP 392          
BLAST of CX298505 vs. ExPASy Swiss-Prot
Match: P2C38_ARATH (Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.069e-61
Identity = 118/153 (77.12%), Postives = 135/153 (88.24%), Query Frame = 2
Query:    5 EGLIQVSRSIGDVYLKKAEYNREPLYAKFRLREPFRKPILSSEPSISAHELQPFDQFLIFASDGLWEHLSNQDAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRASSVRGPSLSVRGGG 463
            +G+IQVSRSIGD YLKKAE+NREPL AKFR+ E F KPIL +EP+I+ H++ P DQFLIFASDGLWEHLSNQ+AVDIV   PR+G AR+L+K AL+EAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSR++S R P LS+ GGG
Sbjct:  227 KGIIQVSRSIGDAYLKKAEFNREPLLAKFRVPEVFHKPILRAEPAITVHKIHPEDQFLIFASDGLWEHLSNQEAVDIVNTCPRNGIARKLIKTALREAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRSTS-RRPLLSISGGG 378          
BLAST of CX298505 vs. ExPASy Swiss-Prot
Match: P2C48_ARATH (Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.682e-54
Identity = 108/154 (70.13%), Postives = 132/154 (85.71%), Query Frame = 2
Query:    5 EGLIQVSRSIGDVYLKKAEYNREPLYAKFRLREPFRKPILSSEPSISAHELQPFDQFLIFASDGLWEHLSNQDAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRASSVRGPSLSVRGGGV 466
            +G+IQVSRSIGD YLK+AE+N+EPL  KFR+ E F KPI+ +EP+I+ H++ P DQFLIFASDGLWEHLSNQ+AVDIV + PR+G AR+LVKAALQEAAKKREMRYSDL+KI+RG+RRHFHDDITVIVVFL  H  + A+  R P +SV+GGG+
Sbjct:  228 KGIIQVSRSIGDAYLKRAEFNQEPLLPKFRVPERFEKPIMRAEPTITVHKIHPEDQFLIFASDGLWEHLSNQEAVDIVNSCPRNGVARKLVKAALQEAAKKREMRYSDLEKIERGIRRHFHDDITVIVVFL--HATNFAT--RTP-ISVKGGGL 376          
BLAST of CX298505 vs. ExPASy Swiss-Prot
Match: P2C42_ARATH (Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.069e-53
Identity = 97/152 (63.82%), Postives = 129/152 (84.87%), Query Frame = 2
Query:    5 EGLIQVSRSIGDVYLKKAEYNREPLYAKFRLREPFRKPILSSEPSISAHELQPFDQFLIFASDGLWEHLSNQDAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRA--SSVRGPSLSVR 454
            +G+IQVSRSIGD+Y+K+ E+N+EP+  KFR+ EP ++P++S+ P+I +H L P D FLIFASDGLWEHL+N+ AV+IV NHPR+GSA+RL+KAAL EAA+KREMRYSDL+KID+ VRRHFHDDITVIVVFL+  L+SR   +S +  ++S+R
Sbjct:  228 KGIIQVSRSIGDMYMKRPEFNKEPISQKFRIAEPMKRPLMSATPTILSHPLHPNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDITVIVVFLNHDLISRGHINSTQDTTVSIR 379          
BLAST of CX298505 vs. ExPASy Swiss-Prot
Match: P2C67_ARATH (Probable protein phosphatase 2C 67 OS=Arabidopsis thaliana GN=At5g02760 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.878e-52
Identity = 105/152 (69.08%), Postives = 125/152 (82.24%), Query Frame = 2
Query:    5 EGLIQVSRSIGDVYLKKAEYNREPLYAKFRLREPFRKPILSSEPSISAHELQPFDQFLIFASDGLWEHLSNQDAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRASSVRGPSLSVRGG 460
            +G+IQV+RSIGD YLK+AE+NREPL  KFRL E F KPILS++PS++   L P D+F+I ASDGLWEHLSNQ+AVDIV N PR G ARRL+KAAL+EAAKKREMRYSDL +I  GVRRHFHDDITVIVV+L+ H V + +S   P LS+RGG
Sbjct:  214 KGVIQVTRSIGDAYLKRAEFNREPLLPKFRLPEHFTKPILSADPSVTITRLSPQDEFIILASDGLWEHLSNQEAVDIVHNSPRQGIARRLLKAALKEAAKKREMRYSDLTEIHPGVRRHFHDDITVIVVYLNPHPV-KTNSWASP-LSIRGG 363          
The following BLAST results are available for this feature:
BLAST of CX298505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
P2C64_ARATH4.183e-7477.51Probable protein phosphatase 2C 64 OS=Arabidopsis ... [more]
P2C60_ORYSJ7.136e-7483.13Probable protein phosphatase 2C 60 OS=Oryza sativa... [more]
P2C28_ORYSJ1.346e-7275.14Probable protein phosphatase 2C 28 OS=Oryza sativa... [more]
P2C79_ARATH9.027e-6977.36Probable protein phosphatase 2C 79 OS=Arabidopsis ... [more]
P2C46_ARATH1.103e-6675.47Probable protein phosphatase 2C 46 OS=Arabidopsis ... [more]
P2C72_ORYSJ2.718e-6570.66Probable protein phosphatase 2C 72 OS=Oryza sativa... [more]
P2C38_ARATH1.069e-6177.12Probable protein phosphatase 2C 38 OS=Arabidopsis ... [more]
P2C48_ARATH3.682e-5470.13Probable protein phosphatase 2C 48 OS=Arabidopsis ... [more]
P2C42_ARATH9.069e-5363.82Probable protein phosphatase 2C 42 OS=Arabidopsis ... [more]
P2C67_ARATH5.878e-5269.08Probable protein phosphatase 2C 67 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06012H09SK RindPdig24 Citrus clementina cDNA clone C06012H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298505 ID=CX298505; Name=CX298505; organism=Citrus clementina; type=EST; length=707bp
GAGGGAAGGCTTGATACAGGTTTCTAGATCTATTGGCGATGTGTATCTGA
AAAAAGCCGAGTATAACAGGGAGCCTTTGTATGCGAAATTTCGCCTTCGT
GAACCTTTTAGAAAACCAATTCTGAGTTCTGAACCATCAATTTCGGCGCA
TGAACTTCAACCTTTTGATCAGTTTCTTATATTTGCTTCTGATGGACTGT
GGGAGCATCTTAGCAATCAAGATGCGGTTGATATAGTCCAAAATCACCCA
CGCAGTGGAAGTGCTAGGAGGCTTGTGAAAGCTGCATTGCAGGAAGCTGC
GAAAAAGAGAGAAATGAGATACTCGGATTTGAAGAAGATTGATCGGGGCG
TTCGCCGGCACTTCCACGATGACATTACGGTCATTGTTGTATTTCTTGAT
TCACATCTTGTGAGCAGAGCCAGCTCAGTCAGAGGCCCGTCTTTGTCTGT
GAGAGGGGGTGGTGTTAACATGCCTTCAAAAACTTTAGCTCCATGCGCCA
CGCCCGTTGAACTTAGCACCACTTAAAAGGGGCTGGTTCTTCATGCAATT
GTAGTTGGTGCTGAAAACATTTTGGAACTTCTACAAAATATCAACTGGTA
TATGCAGGTGATGCAGAAGGTGCAGCCTTTTATTAATTTTTTAATGTACA
AATGTACACTTTTAACTTAAAAGACTTGTATTTTATTTAATTTCTGAGTA
CTTTGAG
back to top