CX298550

Overview
NameCX298550
Unique NameCX298550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298550 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 2
Query:  386 RDSARHGQRIWLGTFETAKEAALAYDRAAFRMRGAKALLNF 508
            RDSARHG R+WLGTFETA+EAALAYDRAAFRMRGAKALLNF
Sbjct:   75 RDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNF 115          
BLAST of CX298550 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  386 RDSARHGQRIWLGTFETAKEAALAYDRAAFRMRGAKALLNF 508
            RD A++G R+WLGTFETA++AALAYDRAAFRMRG++ALLNF
Sbjct:  164 RDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204          
BLAST of CX298550 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 31/41 (75.61%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  386 RDSARHGQRIWLGTFETAKEAALAYDRAAFRMRGAKALLNF 508
            RD A++G R+WLGT+ETA+EAALAYD+AA+RMRG+KALLNF
Sbjct:  115 RDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNF 155          
BLAST of CX298550 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 31/41 (75.61%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  386 RDSARHGQRIWLGTFETAKEAALAYDRAAFRMRGAKALLNF 508
            RD A++G R+WLGT+ETA+EAALAYD+AA+RMRG+KALLNF
Sbjct:  119 RDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNF 159          
BLAST of CX298550 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 2
Query:  386 RDSARHGQRIWLGTFETAKEAALAYDRAAFRMRGAKALLNF 508
            RDSARHG R+WLGTF TA++AA AYDRAAF MRG +A+LNF
Sbjct:   30 RDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNF 70          
BLAST of CX298550 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 31/41 (75.61%), Postives = 38/41 (92.68%), Query Frame = 2
Query:  386 RDSARHGQRIWLGTFETAKEAALAYDRAAFRMRGAKALLNF 508
            RD A++G R+WLGTFETA++AALAYD AAFRMRG++ALLNF
Sbjct:  133 RDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNF 173          
BLAST of CX298550 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 2
Query:  386 RDSARHGQRIWLGTFETAKEAALAYDRAAFRMRGAKALLNF 508
            RD A++G R+WLGT+E+A+EAALAY +AAFRMRG KALLNF
Sbjct:  123 RDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNF 163          
The following BLAST results are available for this feature:
BLAST of CX298550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PTI5_SOLLC5.370e-1592.68Pathogenesis-related genes transcriptional activat... [more]
EF100_ARATH3.258e-1278.05Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF2_TOBAC7.257e-1275.61Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY7.257e-1275.61Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF95_ARATH2.112e-1175.61Ethylene-responsive transcription factor ERF095 OS... [more]
EF101_ARATH2.758e-1175.61Ethylene-responsive transcription factor 2 OS=Arab... [more]
ERF1_SOLLC8.024e-1173.17Ethylene-responsive transcription factor 1 OS=Sola... [more]
back to top
Properties
Property NameValue
Genbank descriptionC06006G08SK RindPdig24 Citrus clementina cDNA clone C06006G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298550 ID=CX298550; Name=CX298550; organism=Citrus clementina; type=EST; length=683bp
GAGGCTCTGTCGAACAATCTTCCAGTTGATTTTCTAGTCCTTGTAATCAC
TAATACATTACACAAGTAAATTATTGTCTAAGAAGCTGATGTAGCTACAA
TTACGAACTCAAAAGAAGGGACTTGGGTTGTGGCCTGTGTTCACCTGTGC
ATATATCTCTCACGATCAAGATGACGCCATTTAAACTTCTATTTTTCTTT
ATCTTTAATGATTACTTGAAAATTTAAGGGTCAAAATTTTTTTGTATTTT
ACTGTAACTTGAAGAAGTTGATGTAACTATTTCAAAATTTATTAGCATTG
TAACTTCCCCAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAANNNNNNNNNNNNNNNNNNNNNGGCACGAGGTCGAGACTCAGCCAGA
CACGGCCAACGGATATGGCTGGGCACGTTTGAAACAGCAAAAGAGGCTGC
CCTGGCTTACGATAGAGCTGCTTTTCGGATGCGTGGTGCTAAGGCGTTGC
TTAATTTTCCGGCCGAAGTGGTTGCTGCTCCGTGTCCATCATCTTCGCCA
TCGCTTGAAAAATCGAATGTAAATTTGAGCTCAATATTGGAGAACAATCC
AGAGGTGAGTGGCAGTAGCTCTAGCACGGTTTCAACTGCGACTCAGAGAT
CGGAATCGGAGTAATTAAGTAGTCAAAGTGCTA
back to top