CX298649

Overview
NameCX298649
Unique NameCX298649
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298649 vs. ExPASy Swiss-Prot
Match: PURA_ARATH (Adenylosuccinate synthetase, chloroplastic OS=Arabidopsis thaliana GN=At3g57610 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.637e-43
Identity = 86/101 (85.15%), Postives = 95/101 (94.06%), Query Frame = 3
Query:    3 ASLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 305
            ASLNLTKLDVLS+L EIQLGVAYK+ DGTPVKSFP DL LLE+L VEYEVLPGW+SDISSVRNYSDLPK A+++VERIEELVGVPI+YIG+GPGRDALIYK
Sbjct:  390 ASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIGPGRDALIYK 490          
BLAST of CX298649 vs. ExPASy Swiss-Prot
Match: PURA_WHEAT (Adenylosuccinate synthetase, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.162e-37
Identity = 75/101 (74.26%), Postives = 88/101 (87.13%), Query Frame = 3
Query:    3 ASLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 305
            +SLNLTKLDVLS LPEI+LGV+Y Q DG  ++SFP DL  LEQ++V YEVLPGW SDISSVR+YS+LP+ AR +VERIEEL GVP++YIGVGPGRDALIYK
Sbjct:  376 SSLNLTKLDVLSGLPEIKLGVSYNQMDGEKLQSFPGDLDTLEQVQVNYEVLPGWDSDISSVRSYSELPQAARRYVERIEELAGVPVHYIGVGPGRDALIYK 476          
BLAST of CX298649 vs. ExPASy Swiss-Prot
Match: PURA_MAIZE (Adenylosuccinate synthetase, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.954e-36
Identity = 74/101 (73.27%), Postives = 87/101 (86.14%), Query Frame = 3
Query:    3 ASLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 305
            +SLNLTKLDVLS L EI++GV+Y Q DG  ++SFP DL  LEQ++V YEVLPGWQSDISSVR Y +LP+ AR +VERIEELVGVP++YIGVGPGRDALIYK
Sbjct:  384 SSLNLTKLDVLSGLSEIKVGVSYTQTDGQKLQSFPGDLDTLEQVQVNYEVLPGWQSDISSVRRYDELPQAARLYVERIEELVGVPVHYIGVGPGRDALIYK 484          
BLAST of CX298649 vs. ExPASy Swiss-Prot
Match: PURA_DICDI (Adenylosuccinate synthetase OS=Dictyostelium discoideum GN=purA PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22
Identity = 56/97 (57.73%), Postives = 68/97 (70.10%), Query Frame = 3
Query:    9 LNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALI 299
            LNLTKLDVLS+  EI++GV YK + G  +KSFPA L  L Q +V YE  PGW+ D+S V  Y  LP  A+ +++RIEELVGVPI YIGVG  R  LI
Sbjct:  326 LNLTKLDVLSDFEEIKIGVDYK-YKGETIKSFPASLETLAQCEVVYESFPGWKCDLSHVTEYDQLPIQAKNYIKRIEELVGVPIVYIGVGVERKNLI 421          
BLAST of CX298649 vs. ExPASy Swiss-Prot
Match: PURA_YEAST (Adenylosuccinate synthetase OS=Saccharomyces cerevisiae GN=ADE12 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 5.715e-22
Identity = 45/100 (45.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    6 SLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 305
            SLN+TKLDVL    EI +G++Y    G  +  FP DL +L +++VEY+VLPGW  DI+ +  Y DLP+ A+++++ IE+ VGVP+ ++G GP R+++++K
Sbjct:  332 SLNITKLDVLDTFKEIPVGISYS-IQGKKLDLFPEDLNILGKVEVEYKVLPGWDQDITKITKYEDLPENAKKYLKYIEDFVGVPVEWVGTGPARESMLHK 430          
BLAST of CX298649 vs. ExPASy Swiss-Prot
Match: PURA_SCHPO (Adenylosuccinate synthetase OS=Schizosaccharomyces pombe GN=ade2 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 47/100 (47.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    6 SLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 305
            SLNLTKLD+L  L EI++ VAY   +G  +++FPADL  LE+ ++ YE  PGW+   + + ++  +P+ A++++E IE+ VGVPI +IGVGPGRD ++ K
Sbjct:  335 SLNLTKLDILDALDEIKVAVAYI-INGKRIETFPADLDSLEEAEIVYETFPGWKVPTTGITHWDQMPENAKKYIEFIEKFVGVPITFIGVGPGRDEMLVK 433          
BLAST of CX298649 vs. ExPASy Swiss-Prot
Match: PURA_DESAA (Adenylosuccinate synthetase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=purA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.096e-20
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 3
Query:   15 LTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRD 290
            +TKLDVL  L  + +  AY + +G  +  FPADL +L + K  YE +PGW  DIS VRN+ DLP+ AR ++ R+EEL+G PI  I VGPGRD
Sbjct:  329 ITKLDVLGGLDSLNICTAY-ECEGETLNFFPADLKVLAKCKPVYETMPGWTEDISGVRNFDDLPENARNYLNRVEELLGAPIKIISVGPGRD 419          
BLAST of CX298649 vs. ExPASy Swiss-Prot
Match: PURA_DROME (Adenylosuccinate synthetase OS=Drosophila melanogaster GN=CG17273 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20
Identity = 43/95 (45.26%), Postives = 66/95 (69.47%), Query Frame = 3
Query:   15 LTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALI 299
            LTKLD+L  LPEI++ VAYK+ +G  +  FP  +  L  ++VEY VLPGWQ+    VRN+ +LP+ A+ +V  +E  + VP+ ++GVG GR+++I
Sbjct:  350 LTKLDILDTLPEIKVAVAYKKPNGEKLDHFPGTIAELGNIEVEYAVLPGWQTSTEEVRNFKELPENAQSYVRLLESELSVPVRWVGVGKGRESII 444          
BLAST of CX298649 vs. ExPASy Swiss-Prot
Match: PURA_ACIC1 (Adenylosuccinate synthetase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=purA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 3
Query:   15 LTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALI 299
            LTKLDVLS    I + VAY+  DG  V+  P     L  ++  YE LPGWQ D+S+ R+  DLPK A+ +VE ++EL GVP + IGVGPGRD  I
Sbjct:  328 LTKLDVLSHFERIPVCVAYRLPDGRTVEEMPMTQTELHHVEPVYEELPGWQEDLSAARSLEDLPKNAQRYVEFLQELAGVPFSVIGVGPGRDQTI 422          
BLAST of CX298649 vs. ExPASy Swiss-Prot
Match: PURA1_BOVIN (Adenylosuccinate synthetase isozyme 1 OS=Bos taurus GN=ADSSL1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 44/98 (44.90%), Postives = 68/98 (69.39%), Query Frame = 3
Query:    6 SLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALI 299
            +L LTKLD+L  L EI++GVAYK   G  +  FPA+  +L++++VEYE LPGW++D +  R + DLP  A+ ++  +E  VGV + ++GVG  RD++I
Sbjct:  358 ALALTKLDILDALDEIKVGVAYK-LGGKRIPYFPANQEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYIRFVENHVGVAVKWVGVGKSRDSMI 454          
The following BLAST results are available for this feature:
BLAST of CX298649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 467
Match NameE-valueIdentityDescription
PURA_ARATH2.637e-4385.15Adenylosuccinate synthetase, chloroplastic OS=Arab... [more]
PURA_WHEAT2.162e-3774.26Adenylosuccinate synthetase, chloroplastic (Fragme... [more]
PURA_MAIZE6.954e-3673.27Adenylosuccinate synthetase, chloroplastic OS=Zea ... [more]
PURA_DICDI1.504e-2257.73Adenylosuccinate synthetase OS=Dictyostelium disco... [more]
PURA_YEAST5.715e-2245.00Adenylosuccinate synthetase OS=Saccharomyces cerev... [more]
PURA_SCHPO2.837e-2147.00Adenylosuccinate synthetase OS=Schizosaccharomyces... [more]
PURA_DESAA4.096e-2051.09Adenylosuccinate synthetase OS=Desulfatibacillum a... [more]
PURA_DROME6.987e-2045.26Adenylosuccinate synthetase OS=Drosophila melanoga... [more]
PURA_ACIC12.655e-1950.53Adenylosuccinate synthetase OS=Acidothermus cellul... [more]
PURA1_BOVIN7.725e-1944.90Adenylosuccinate synthetase isozyme 1 OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionC06014A09SK RindPdig24 Citrus clementina cDNA clone C06014A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298649 ID=CX298649; Name=CX298649; organism=Citrus clementina; type=EST; length=671bp
AGGCTTCTTTGAATCTCACCAAATTGGATGTTTTATCAGAGCTTCCTGAA
ATTCAGCTTGGTGTTGCTTATAAACAATTTGATGGTACACCAGTCAAATC
ATTCCCTGCAGATCTTCTACTGCTTGAGCAATTGAAGGTCGAGTATGAAG
TTTTACCCGGGTGGCAGTCTGATATCTCTTCTGTTAGAAACTACTCAGAC
CTGCCAAAGGGAGCACGTGAGTTCGTGGAGAGGATAGAAGAACTTGTTGG
TGTACCAATCAATTATATTGGCGTTGGACCTGGGCGTGATGCTCTCATAT
ACAAGTAGGATAACAATTGAAGTTGCAGTGCTCCATAAAGCTTTCAAGGA
ATTTTAATTGAATTTATTCCCCAGTTATATACTTGACAGAGATTTTGGGG
GCAAAGCAGAATTTGATTTAGTTTACATGAATTTAGTGTACCAATTATGT
TGTCTCCACATCTTGAGGCCACTCTGCATTGCATTGCAGTGTGTTGCATT
GCGTTATTATTTTGATTGTTGTATCAATCAATTTTGTTGAGCTGCTACAA
GAGATTAGAAAGCTGACGGAAGGGAGAGTTTCGAAAAGCCAACCTCAACA
CTCCTTTCAGGCAGCATTTGGGTTACAAAAATAATTTATTATTTTCTCAA
ATCTGTATTAAGAGTCGAATC
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