CX298651

Overview
NameCX298651
Unique NameCX298651
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length383
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298651_ssr148 microsatellite CX298651_ssr148:148..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX298651 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.880e-18
Identity = 38/50 (76.00%), Postives = 47/50 (94.00%), Query Frame = 3
Query:    3 KRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINFN 152
            K G+P++PGRPIETYIFAMFDEN KT PE+E+HWGLF+PT+QP+YQI+FN
Sbjct:  302 KEGTPRRPGRPIETYIFAMFDENRKT-PELEKHWGLFSPTKQPKYQISFN 350          
BLAST of CX298651 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    3 KRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINFN*LTKLKQLHAPTGS 194
            K GSP+KPG PIETYIFAMFDEN K  PE+E+H+GLF+P +QP+Y +NF    ++  + A T S
Sbjct:  258 KEGSPRKPG-PIETYIFAMFDENNKN-PELEKHFGLFSPNKQPKYNLNFGVSERVWDISAETNS 319          
BLAST of CX298651 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    3 KRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINFN*LTKLKQLHAPTGS 194
            K GSP+KPG PIETYIFAMFDEN K  PE+E+H+GLF+P +QP+Y +NF    ++  + A T S
Sbjct:  293 KEGSPRKPG-PIETYIFAMFDENNKN-PELEKHFGLFSPNKQPKYNLNFGVSERVWDISAETNS 354          
BLAST of CX298651 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    3 KRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINFN*LTKLKQLHAPTGS 194
            K GSP+KPG PIETYIFAMFDEN K  PE+E+H+GLF+P +QP+Y +NF    ++  + A T S
Sbjct:  267 KEGSPRKPG-PIETYIFAMFDENNKN-PELEKHFGLFSPNKQPKYNLNFGVSERVWDISAETNS 328          
BLAST of CX298651 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.275e-14
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 3
Query:    3 KRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAP-TRQPRYQINFN 152
            K+G+PK+PG P+ETY+FAMFDEN K  PE E+ WGLF+P T+QP+Y INFN
Sbjct:  298 KQGTPKRPGAPLETYVFAMFDENQKQ-PEFEKFWGLFSPITKQPKYSINFN 347          
BLAST of CX298651 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.583e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 3
Query:    3 KRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINF 149
            K GSP+KPG PIETYIFAMFDEN K  PE+E+H+GLF+P +QP+Y INF
Sbjct:  301 KEGSPRKPG-PIETYIFAMFDENNKN-PELEKHFGLFSPNKQPKYNINF 347          
BLAST of CX298651 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.583e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 3
Query:    3 KRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINF 149
            K GSP+KPG PIETYIFAMFDEN K  PE+E+H+GLF+P +QP+Y INF
Sbjct:  302 KEGSPRKPG-PIETYIFAMFDENNKN-PELEKHFGLFSPNKQPKYNINF 348          
BLAST of CX298651 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.523e-14
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 3
Query:    3 KRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINF 149
            K GSP+KPG PIETYIFAMFDEN K  PE+E+H+GLF+P +QP+Y +NF
Sbjct:  301 KEGSPRKPG-PIETYIFAMFDENNKN-PELEKHFGLFSPNKQPKYNLNF 347          
BLAST of CX298651 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.244e-13
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 3
Query:    3 KRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINF 149
            K GSP+KP RPIETYIFAMFDEN K  PE+E+H+GLF+P +QP+Y +NF
Sbjct:  301 KEGSPRKP-RPIETYIFAMFDENNKN-PELEKHFGLFSPNKQPKYNLNF 347          
BLAST of CX298651 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.624e-13
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 3
Query:    3 KRGSPKKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINF 149
            K GSP+KPG PIETYIFAMFDEN K  PE+E+H+G+F+P +QP+Y +NF
Sbjct:  293 KEGSPRKPG-PIETYIFAMFDENNKN-PELEKHFGMFSPNKQPKYNLNF 339          
The following BLAST results are available for this feature:
BLAST of CX298651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
E13B_PRUPE4.880e-1876.00Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E133_SOLTU1.919e-1457.81Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]
E132_SOLTU1.919e-1457.81Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E131_SOLTU1.919e-1457.81Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E13A_SOYBN4.275e-1466.67Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
E13E_TOBAC5.583e-1471.43Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_TOBAC5.583e-1471.43Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13F_TOBAC9.523e-1469.39Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_NICPL1.244e-1369.39Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_SOLLC1.624e-1367.35Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]

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Properties
Property NameValue
Genbank descriptionC06014A11SK RindPdig24 Citrus clementina cDNA clone C06014A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298651 ID=CX298651; Name=CX298651; organism=Citrus clementina; type=EST; length=383bp
TGAAGCGAGGGTCACCAAAGAAGCCTGGAAGGCCTATTGAGACTTACATA
TTTGCTATGTTTGATGAGAATGGCAAAACGGGACCTGAGATTGAGAGGCA
TTGGGGACTTTTTGCTCCAACTAGGCAGCCTAGATACCAGATTAATTTTA
ATTAATTAACTAAGCTAAAGCAGCTGCATGCACCAACAGGATCCGACGGA
ATATTTATACTGGAATAAATTCTACCATATGTACTAGTGAATAAGAGTTT
GTATCACCACCTTCAATGGGTGCATGAGAGCAAATTTCATGAACAATAAT
GTCAATGGTTACGGTTTTGCAAAGCTTAATTTATAATACTATGTCCGATC
CTCATTTGTGTAAAAAAAAAAAAAAAAAAAAAA
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