CX298654

Overview
NameCX298654
Unique NameCX298654
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig757 contig Ccv1_Contig757:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX298654 vs. ExPASy Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.856e-29
Identity = 67/141 (47.52%), Postives = 89/141 (63.12%), Query Frame = 2 
Query:    2 FHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILL--GGAFRDYNKEKNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVP--LNSSN 412
            F V DA LT F+L SNNNL Y L+LN++IRN    IG+HYDR EA VYY ++RL +VP+  FY G KNT  L  +FEGQ ++L  G   + +  ++  GV+ IDVKL +  R  +  + T   KP + C LK+P  L SSN
Sbjct:    9 FQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMVLHLVTWPMKPVVRCHLKIPLALGSSN 149
The following BLAST results are available for this feature:
BLAST of CX298654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYP24_ARATH2.856e-2947.52Putative syntaxin-24 OS=Arabidopsis thaliana GN=SY... [more]
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Properties
Property NameValue
Genbank descriptionC06014B02SK RindPdig24 Citrus clementina cDNA clone C06014B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298654 ID=CX298654; Name=CX298654; organism=Citrus clementina; type=EST; length=673bp
GTTCCACGTCACCGATGCCTCTCTCACTGAATTCAACCTCACATCCAACA
ACAACCTCAACTACAAGCTTGCCCTTAACATCACCATCAGAAACCCTAAC
AAAAAGATCGGCGTACACTACGACCGTATCGAAGCTAGGGTTTACTACGA
CGACAAGAGGTTAACATCTGTTCCTCTGACTCCATTTTATCAAGGACACA
AAAACACCAGCTATTTGAACCCCGTTTTCGAAGGGCAGCAGATTCTGCTA
GGCGGTGCATTTAGAGACTATAATAAAGAGAAGAATGCCGGAGTTTTTAG
CATCGACGTGAAGCTTAAATTGAAAGTTAGGTTCAAGTTGGGAAAAATCA
AGACTCCAAAGTTCAAGCCCACGATCGAGTGTGATCTGAAGGTTCCTTTG
AATTCTTCTAATGGCAGATTTGCTGGCCGTTTTGAAACTACTAAGTGCGA
TGTTGATTTCTAGTTAATTGATCATCAGTGTTGATGATCATGATGATCTT
ATTCTCTTGTTTGATCGAGTCTTCGTGTATTATTATTTTTTTCCTTTTTT
GAGTTTATTATTATATTCTTTTGTTTTTTAGCGTATACATTTTACGGTCT
TGTTATTATACGGCTTCCTTTTCATTGAGGCTACACCTGGTACCTTTATG
TAAATAAATAATGTTTGTTATTT
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