CX298656

Overview
NameCX298656
Unique NameCX298656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298656 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.309e-58
Identity = 107/118 (90.68%), Postives = 111/118 (94.07%), Query Frame = 1
Query:    7 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGS 360
            YLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE  S
Sbjct:   47 YLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAES 164          
BLAST of CX298656 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.017e-57
Identity = 106/123 (86.18%), Postives = 113/123 (91.87%), Query Frame = 1
Query:    7 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVR 375
            YLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE  ++V  R
Sbjct:   47 YLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPR 169          
BLAST of CX298656 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 7.666e-57
Identity = 106/124 (85.48%), Postives = 115/124 (92.74%), Query Frame = 1
Query:    7 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRS 378
            YLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE  + +  +S
Sbjct:   47 YLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKS 170          
BLAST of CX298656 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.666e-57
Identity = 106/124 (85.48%), Postives = 115/124 (92.74%), Query Frame = 1
Query:    7 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRS 378
            YLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE  + +  +S
Sbjct:   47 YLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKS 170          
BLAST of CX298656 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.708e-56
Identity = 105/123 (85.37%), Postives = 114/123 (92.68%), Query Frame = 1
Query:    7 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVR 375
            YLEDV+AHKQAIPF R+C GVGRTAQAK+R+ NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE  ++V  R
Sbjct:   47 YLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAAR 169          
BLAST of CX298656 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 87/129 (67.44%), Postives = 103/129 (79.84%), Query Frame = 1
Query:    7 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRK 393
            YL+DV+A KQ IPF RFC GVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ +SEKE+ V +     V+V+ V+ +K
Sbjct:   47 YLKDVIAKKQIIPFRRFCGGVGRKAQAKAFK-HTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVSEKEQVVPR-AEEEVEVKKVSKKK 173          
BLAST of CX298656 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 4.226e-39
Identity = 81/138 (58.70%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    7 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLSVLCR 420
            YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K    + + + ++ +K     ++ R
Sbjct:   47 YLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183          
BLAST of CX298656 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 4.226e-39
Identity = 81/138 (58.70%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    7 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLSVLCR 420
            YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K    + + + ++ +K     ++ R
Sbjct:   47 YLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183          
BLAST of CX298656 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 5.520e-39
Identity = 81/138 (58.70%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    7 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLSVLCR 420
            YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K    + + + ++ +K     ++ R
Sbjct:   47 YLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183          
BLAST of CX298656 vs. ExPASy Swiss-Prot
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 5.520e-39
Identity = 81/138 (58.70%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    7 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEVGSLVKVRSVNYRKYDLLSVLCR 420
            YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K    + + + ++ +K     ++ R
Sbjct:   47 YLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183          
The following BLAST results are available for this feature:
BLAST of CX298656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL171_HORVU5.309e-5890.6860S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL172_HORVU2.017e-5786.1860S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL172_ARATH7.666e-5785.4860S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH7.666e-5785.4860S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL17_MAIZE1.708e-5685.3760S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL17_PODCA5.897e-4167.4460S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_HUMAN4.226e-3958.7060S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA4.226e-3958.7060S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_RAT5.520e-3958.7060S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]
RL17_BOVIN5.520e-3958.7060S ribosomal protein L17 OS=Bos taurus GN=RPL17 P... [more]

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Properties
Property NameValue
Genbank descriptionC06014B04SK RindPdig24 Citrus clementina cDNA clone C06014B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298656 ID=CX298656; Name=CX298656; organism=Citrus clementina; type=EST; length=694bp
GAGGGGTACTTGGAGGATGTTATGGCTCACAAGCAAGCCATACCATTCAC
CCGCTTCTGTCGCGGTGTTGGGCGAACTGCACAGGCTAAAAACCGTAATC
CAAATGGTCAAGGTCGCTGGCCGGTTAAATCTGCAAAGTTCATTCTGGAT
TTACTCAAGAATGCTGAGAGTAATGCAGAGGTGAAAGGCTTAGATGTGGA
CGCGCTTTACATTTCTCACATCCAAGTGAATCAAGCCCAGAAGCAGAGGC
GTCGGACTTATCGTGCACATGGAAGGATTAACCCATACATGTCTTCCCCA
TGTCATATTGAGTTGACACTCTCAGAAAAGGAGGAACCTGTGAAGAAAGA
GGTAGGTTCTTTAGTTAAAGTTCGATCAGTAAATTATCGAAAGTATGATT
TGCTTTCTGTGCTGTGTAGGCATGCTTGCTTTTAATCCCTTGGAACTTTT
AAATTCGTTATCATTTCTATTCAAGGTTTCAGATTTGTTAATCTGCGGAA
TGTTCTATTGCATCTTATTCCTTTGTTTTGTAGCCGGAGACCCAGTTGGC
TTCCAGGAAACCGAGGACAGCTACATAGTGGTGCCTTATCTTGAATGTTG
GGAGTCCTGACTTGATTTCTCTTTTTTCCCCCTTTGTACTACCATGACAA
CATACAATTTTGTTTACAAGATACTTGTTCCTGAAGACTTCTGT
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