CX298657

Overview
NameCX298657
Unique NameCX298657
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length347
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig153 contig Ccv1_Contig153:879..1225. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298657 vs. ExPASy Swiss-Prot
Match: FABI_BRANA (Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 1.681e-47
Identity = 96/115 (83.48%), Postives = 102/115 (88.70%), Query Frame = 2
Query:    2 LKHFISLMNPGGSSLSLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGTKHRIRVNAISAGPLRSRAAKAIGFIDTMIEYSLANAPLHKELSADEVGNTAAFLASPLASAI 346
            L HF+ +MNPGG+S+SLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAG K  IRVN ISAGPL SRAAKAIGFIDTMIEYS  NAP+ K L+ADEVGN AAFL SPLASAI
Sbjct:  243 LSHFLPIMNPGGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAI 357          
BLAST of CX298657 vs. ExPASy Swiss-Prot
Match: FABI_ANASP (Enoyl-[acyl-carrier-protein] reductase [NADH] OS=Anabaena sp. (strain PCC 7120) GN=fabI PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.314e-19
Identity = 56/109 (51.38%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   20 LMNPGGSSLSLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGTKHRIRVNAISAGPLRSRAAKAIGFIDTMIEYSLANAPLHKELSADEVGNTAAFLASPLASAI 346
            LM  GGS ++L+Y+   R +P Y   M  AKA LE+  R LA E G+++ IRVNAISAGP+R+ A+ A+G I  MI +    APL + ++  EVGNTAAFLAS LAS I
Sbjct:  136 LMTEGGSIITLSYLGGVRAVPNYNV-MGVAKAGLEASVRYLASELGSQN-IRVNAISAGPIRTLASSAVGGILDMIHHVEQVAPLRRTVTQLEVGNTAAFLASDLASGI 242          
BLAST of CX298657 vs. ExPASy Swiss-Prot
Match: FABI1_RHIME (Enoyl-[acyl-carrier-protein] reductase [NADH] 1 OS=Rhizobium meliloti GN=fabI1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.611e-19
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 2
Query:   20 LMNPGGSSLSLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGTKHRIRVNAISAGPLRSRAAKAIGFIDTMIEYSLANAPLHKELSADEVGNTAAFLASPLASAI 346
            +MN GGS L+LTY  +E+++P Y   M  AKAALE+  R LA + G +  IRVNAISAGP+++ AA  IG    +++++  NAPL + +S +EVGN+A +L S L+S +
Sbjct:  137 VMNDGGSILTLTYYGAEKVMPHYNV-MGVAKAALEASVRYLAVDLGNRG-IRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLKRTVSIEEVGNSALYLLSDLSSGV 243          
BLAST of CX298657 vs. ExPASy Swiss-Prot
Match: FABI_SYNY3 (Enoyl-[acyl-carrier-protein] reductase [NADH] OS=Synechocystis sp. (strain PCC 6803) GN=fabI PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.652e-18
Identity = 55/109 (50.46%), Postives = 70/109 (64.22%), Query Frame = 2
Query:   20 LMNPGGSSLSLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGTKHRIRVNAISAGPLRSRAAKAIGFIDTMIEYSLANAPLHKELSADEVGNTAAFLASPLASAI 346
            LM  GGS ++LTY    ++IP Y   M  AKA LE   R LA E G ++ IRVN ISAGP+R+ A+ A+G I  MI +    APL + ++  EVGNTAAFLAS L+S I
Sbjct:  136 LMTNGGSIITLTYFGGVKVIPNYNL-MGVAKAGLEMTVRYLAAELGPQN-IRVNGISAGPIRTLASSAVGGILDMIHHVEEVAPLKRTVTQTEVGNTAAFLASDLSSGI 242          
BLAST of CX298657 vs. ExPASy Swiss-Prot
Match: FABI_RICTY (Enoyl-[acyl-carrier-protein] reductase [NADH] OS=Rickettsia typhi GN=fabI PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.063e-17
Identity = 47/110 (42.73%), Postives = 74/110 (67.27%), Query Frame = 2
Query:   17 SLMNPGGSSLSLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGTKHRIRVNAISAGPLRSRAAKAIGFIDTMIEYSLANAPLHKELSADEVGNTAAFLASPLASAI 346
            +LM+ GGS L+LTY  +E++IP Y   M  AKAALE+  + LA + G ++ IRVNAISAGP+++ A+ AI    TM+++  + APL + ++ ++VG  A +L S L+  +
Sbjct:  134 TLMHDGGSILTLTYYGAEKVIPNYNI-MGVAKAALEASVKYLANDMG-ENNIRVNAISAGPIKTLASSAISDFSTMLKFHASTAPLKRNITQEDVGGAAVYLFSELSKGV 241          
BLAST of CX298657 vs. ExPASy Swiss-Prot
Match: FABI_RICCN (Enoyl-[acyl-carrier-protein] reductase [NADH] OS=Rickettsia conorii GN=fabI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.367e-17
Identity = 48/110 (43.64%), Postives = 73/110 (66.36%), Query Frame = 2
Query:   17 SLMNPGGSSLSLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGTKHRIRVNAISAGPLRSRAAKAIGFIDTMIEYSLANAPLHKELSADEVGNTAAFLASPLASAI 346
            +LM+ GGS ++LTY  +E++IP Y   M  AKAALE+  + LA + G ++ IRVNAISAGP+++ A+ AIG   TM++   A APL +  + ++VG  A +L S L+  +
Sbjct:  134 ALMHNGGSIVTLTYYGAEKVIPNYNV-MGVAKAALEASIKYLANDMG-ENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAPLKRNTTQEDVGGAAVYLFSELSKGV 241          
BLAST of CX298657 vs. ExPASy Swiss-Prot
Match: FABI_RICFE (Enoyl-[acyl-carrier-protein] reductase [NADH] OS=Rickettsia felis GN=fabI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.092e-17
Identity = 47/110 (42.73%), Postives = 73/110 (66.36%), Query Frame = 2
Query:   17 SLMNPGGSSLSLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGTKHRIRVNAISAGPLRSRAAKAIGFIDTMIEYSLANAPLHKELSADEVGNTAAFLASPLASAI 346
            +LM+ GGS ++LTY  +E++IP Y   M  +KAALE+  + LA + G ++ IRVNAISAGP+++ A+ AIG   TM++   A APL +  + ++VG  A +L S L+  +
Sbjct:  134 ALMHDGGSIVTLTYYGAEKVIPNYNV-MGISKAALEASVKYLATDLG-ENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAPLKRNTTQEDVGGAAVYLFSNLSKGV 241          
BLAST of CX298657 vs. ExPASy Swiss-Prot
Match: FABI_RICPR (Enoyl-[acyl-carrier-protein] reductase [NADH] OS=Rickettsia prowazekii GN=fabI PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.274e-17
Identity = 47/110 (42.73%), Postives = 73/110 (66.36%), Query Frame = 2
Query:   17 SLMNPGGSSLSLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGTKHRIRVNAISAGPLRSRAAKAIGFIDTMIEYSLANAPLHKELSADEVGNTAAFLASPLASAI 346
            +LM+ GGS ++LTY  +E++IP Y   M  AKAALE+  + LA + G ++ IRVNAISAGP+++ A+ AI    TM++   A APL + ++ ++VG  A +L S L+  +
Sbjct:  134 TLMHNGGSIVTLTYYGAEKVIPNYNI-MGVAKAALEASVKYLANDMG-ENNIRVNAISAGPIKTLASSAISDFSTMLKSHAATAPLKRNITQEDVGGAAVYLFSELSKGV 241          
BLAST of CX298657 vs. ExPASy Swiss-Prot
Match: FABI_HELPY (Enoyl-[acyl-carrier-protein] reductase [NADH] OS=Helicobacter pylori GN=fabI PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.274e-17
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 2
Query:   20 LMNPGGSSLSLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGTKHRIRVNAISAGPLRSRAAKAIGFIDTMIEYSLANAPLHKELSADEVGNTAAFLASPLASAI 346
            L+N G S L+L+Y+ S + +  Y   M  AKAALES  R LA + G KH IRVNA+SAGP+R+ A+  I     +++++  NAPL K +S +EVGN   +L S L+S +
Sbjct:  133 LLNNGASVLTLSYLGSTKYMAHYNV-MGLAKAALESAVRYLAVDLG-KHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGV 239          
BLAST of CX298657 vs. ExPASy Swiss-Prot
Match: FABI_HAEIN (Enoyl-[acyl-carrier-protein] reductase [NADH] OS=Haemophilus influenzae GN=fabI PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.888e-17
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 2
Query:   23 MNPGGSSLSLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGTKHRIRVNAISAGPLRSRAAKAIGFIDTMIEYSLANAPLHKELSADEVGNTAAFLASPLASAI 346
            +NP  + L+L+Y+ +ER IP Y   M  AKA+LE+ TRV+A + G K  IRVNAISAGP+R+ AA  I     M+      A L + ++ ++VGN+AAFL S LAS I
Sbjct:  135 LNPNAALLTLSYLGAERAIPNYNV-MCLAKASLEAATRVMAADLG-KEGIRVNAISAGPIRTLAASGIKNFKKMLSTFEKTAALRRTVTIEDVGNSAAFLCSDLASGI 240          
The following BLAST results are available for this feature:
BLAST of CX298657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FABI_BRANA1.681e-4783.48Enoyl-[acyl-carrier-protein] reductase [NADH], chl... [more]
FABI_ANASP4.314e-1951.38Enoyl-[acyl-carrier-protein] reductase [NADH] OS=A... [more]
FABI1_RHIME9.611e-1946.79Enoyl-[acyl-carrier-protein] reductase [NADH] 1 OS... [more]
FABI_SYNY33.652e-1850.46Enoyl-[acyl-carrier-protein] reductase [NADH] OS=S... [more]
FABI_RICTY1.063e-1742.73Enoyl-[acyl-carrier-protein] reductase [NADH] OS=R... [more]
FABI_RICCN2.367e-1743.64Enoyl-[acyl-carrier-protein] reductase [NADH] OS=R... [more]
FABI_RICFE3.092e-1742.73Enoyl-[acyl-carrier-protein] reductase [NADH] OS=R... [more]
FABI_RICPR5.274e-1742.73Enoyl-[acyl-carrier-protein] reductase [NADH] OS=R... [more]
FABI_HELPY5.274e-1744.95Enoyl-[acyl-carrier-protein] reductase [NADH] OS=H... [more]
FABI_HAEIN6.888e-1747.22Enoyl-[acyl-carrier-protein] reductase [NADH] OS=H... [more]

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Properties
Property NameValue
Genbank descriptionC06014B05SK RindPdig24 Citrus clementina cDNA clone C06014B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298657 ID=CX298657; Name=CX298657; organism=Citrus clementina; type=EST; length=347bp
TCTCAAGCATTTCATCTCATTAATGAACCCAGGTGGTTCTTCACTTTCGC
TTACATACATTGCTTCCGAGAGGATCATTCCAGGATATGGTGGAGGAATG
AGTTCTGCTAAAGCTGCACTAGAGAGTGACACACGAGTGCTTGCTTTTGA
AGCTGGGACAAAACACAGAATCAGGGTCAACGCCATCTCGGCTGGTCCGC
TGAGAAGTCGTGCTGCAAAAGCAATTGGATTCATTGATACAATGATTGAA
TATTCATTAGCCAATGCACCATTGCACAAAGAATTATCTGCAGATGAGGT
GGGGAACACTGCTGCCTTCTTAGCATCCCCTTTGGCCTCCGCCATCA
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