CX298660

Overview
NameCX298660
Unique NameCX298660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298660 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAV (Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.949e-27
Identity = 68/148 (45.95%), Postives = 86/148 (58.11%), Query Frame = 2
Query:    8 VPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISYEHQWRASPNGGSICKTICKLHAKGEVEVTEEQXXXXXXXXXXXXXXXXXYLQANLDVCN 445
            +PP R+F A  L +DNL  KI P  +K+ E+LEG+GGPG+IKK T  EG Q  Y KHKI+  DK N    Y++IEG+ L D  LEKISYE +  ASP+GGSI K+    H KG VE+ EE                  YL+ + D  N
Sbjct:   14 IPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGD-TLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN 160          
BLAST of CX298660 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAR (Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.562e-26
Identity = 65/148 (43.92%), Postives = 87/148 (58.78%), Query Frame = 2
Query:    8 VPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISYEHQWRASPNGGSICKTICKLHAKGEVEVTEEQXXXXXXXXXXXXXXXXXYLQANLDVCN 445
            +PP ++F A  L +DNL  K+ P  VK  E+LEG+GG G+IKK T  EG Q  Y KH+++  DK NL   Y++IEG+ L+D  +E I+Y+ +  ASP+GGSI KT    H KG+VE+ EEQ                 YL AN D  N
Sbjct:   14 IPPEKLFKAFILDADNLIPKVAPTAVKGTEILEGDGGVGTIKKVTFGEGSQYAYVKHRVDGIDKDNLSYSYTLIEGDALSDV-IENIAYDIKLVASPDGGSIVKTTSHYHTKGDVEIKEEQVKAGKEKAAGLFKLVEAYLLANPDAYN 160          
BLAST of CX298660 vs. ExPASy Swiss-Prot
Match: MAL12_MALDO (Major allergen Mal d 1 OS=Malus domestica PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 64/148 (43.24%), Postives = 85/148 (57.43%), Query Frame = 2
Query:    8 VPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISYEHQWRASPNGGSICKTICKLHAKGEVEVTEEQXXXXXXXXXXXXXXXXXYLQANLDVCN 445
            +PP R+F A  L +DNL  KI P  +K+ E+LEG+GGPG+IKK T  EG Q  Y KHKI+  D+ N    Y++IEG+ L D  +EK+SYE +  AS   GSI K+I   H KG+VE+ EE                  YL+ + D  N
Sbjct:   14 IPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSVDEANYSYAYTLIEGDALTD-TIEKVSYETKLVAS-GSGSIIKSISHYHTKGDVEIKEEHVKAGKEKAHGLFKLIESYLKGHPDAYN 159          
BLAST of CX298660 vs. ExPASy Swiss-Prot
Match: MPAC2_CARBE (Major pollen allergen Car b 1 isoform 2 OS=Carpinus betulus PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 62/121 (51.24%), Postives = 77/121 (63.64%), Query Frame = 2
Query:    8 VPPARMFNALASDN--LPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISYEHQWRASPNGGSICKTICKLHAKGEVEVTEEQ 364
            +P AR+F A   D   L  K+ P  V +VE +EGNGGPG+IKK T  EG  VKY K ++EE D  N K  Y+VIEG+ L D KLEK+S+E +  A+P GGSI K   K HAKG  EV  E+
Sbjct:   14 IPAARLFKAFILDGNKLIPKVSPQAVSSVENVEGNGGPGTIKKITFSEGSPVKYVKERVEEIDHTNFKYNYTVIEGDVLGD-KLEKVSHELKIVAAPGGGSIVKISSKFHAKGYHEVNAEE 133          
BLAST of CX298660 vs. ExPASy Swiss-Prot
Match: BEV1J_BETVE (Major pollen allergen Bet v 1-J OS=Betula verrucosa GN=BETV1J PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 66/148 (44.59%), Postives = 82/148 (55.41%), Query Frame = 2
Query:    8 VPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISYEHQWRASPNGGSICKTICKLHAKGEVEVTEEQXXXXXXXXXXXXXXXXXYLQANLDVCN 445
            +P AR+F A  L  DNL  K+ P  + +VE +EGNGGPG+IKK +  EG   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+PNGGSI K   K H KG+ EV  EQ                 YL A+ D  N
Sbjct:   14 IPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGD-TLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAYN 160          
BLAST of CX298660 vs. ExPASy Swiss-Prot
Match: BEV1F_BETVE (Major pollen allergen Bet v 1-F/I OS=Betula verrucosa GN=BETV1F PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 66/148 (44.59%), Postives = 82/148 (55.41%), Query Frame = 2
Query:    8 VPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISYEHQWRASPNGGSICKTICKLHAKGEVEVTEEQXXXXXXXXXXXXXXXXXYLQANLDVCN 445
            +P AR+F A  L  DNL  K+ P  + +VE +EGNGGPG+IKK +  EG   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+PNGGSI K   K H KG+ EV  EQ                 YL A+ D  N
Sbjct:   14 IPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGD-TLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAYN 160          
BLAST of CX298660 vs. ExPASy Swiss-Prot
Match: MPAG1_ALNGL (Major pollen allergen Aln g 1 OS=Alnus glutinosa PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 63/148 (42.57%), Postives = 83/148 (56.08%), Query Frame = 2
Query:    8 VPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISYEHQWRASPNGGSICKTICKLHAKGEVEVTEEQXXXXXXXXXXXXXXXXXYLQANLDVCN 445
            +P AR+F A  L  D L  K+ P+ V +VE +EGNGGPG+IKK T  EG   KY K +++E D+VN K  +SVIEG  + D  LEK+  E +  A+P+GGSI K   K H KG+ E+  EQ                 YL A+ D  N
Sbjct:   14 IPAARLFKAFILDGDKLLPKVAPEAVSSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDRVNFKYSFSVIEGGAVGD-ALEKVCNEIKIVAAPDGGSILKISNKFHTKGDHEINAEQIKIEKEKAVGLLKAVESYLLAHSDAYN 160          
BLAST of CX298660 vs. ExPASy Swiss-Prot
Match: BEV1E_BETVE (Major pollen allergen Bet v 1-E OS=Betula verrucosa GN=BETV1E PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 66/148 (44.59%), Postives = 82/148 (55.41%), Query Frame = 2
Query:    8 VPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISYEHQWRASPNGGSICKTICKLHAKGEVEVTEEQXXXXXXXXXXXXXXXXXYLQANLDVCN 445
            +P AR+F A  L  DNL  K+ P  + +VE +EGNGGPG+IKK +  EG   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+PNGGSI K   K H KG+ EV  EQ                 YL A+ D  N
Sbjct:   14 IPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGIPFKYVKGRVDEVDHTNFKYSYSVIEGGPVGD-TLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAYN 160          
BLAST of CX298660 vs. ExPASy Swiss-Prot
Match: BEV1A_BETVE (Major pollen allergen Bet v 1-A OS=Betula verrucosa GN=BETVIA PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 65/148 (43.92%), Postives = 82/148 (55.41%), Query Frame = 2
Query:    8 VPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISYEHQWRASPNGGSICKTICKLHAKGEVEVTEEQXXXXXXXXXXXXXXXXXYLQANLDVCN 445
            +P AR+F A  L  DNL  K+ P  + +VE +EGNGGPG+IKK +  EG   KY K +++E D  N K  YSVIEG  + D  LEKIS E +  A+P+GGSI K   K H KG+ EV  EQ                 YL A+ D  N
Sbjct:   14 IPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGD-TLEKISNEIKIVATPDGGSILKISNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 160          
BLAST of CX298660 vs. ExPASy Swiss-Prot
Match: PYRC1_PYRCO (Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 61/148 (41.22%), Postives = 86/148 (58.11%), Query Frame = 2
Query:    8 VPPARMFNA--LASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLADYKLEKISYEHQWRASPNGGSICKTICKLHAKGEVEVTEEQXXXXXXXXXXXXXXXXXYLQANLDVCN 445
            +PP R+F A  L +DNL  KI P  +K+ E+LEGNGGPG+IKK T  EG Q  Y KH+++  D+ +    Y++IEG+ L D  +EKISYE +  AS +G +I K+I   H KG++E+ EE                  YL+ + D  N
Sbjct:   14 IPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGNGGPGTIKKITFGEGSQYGYVKHRVDSIDEASYSYAYTLIEGDALTD-TIEKISYEAKLVASGSGSTI-KSISHYHTKGDIEIKEEHVKAGKEKAHGLFKLIESYLKDHPDAYN 159          
The following BLAST results are available for this feature:
BLAST of CX298660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PRU1_PRUAV2.949e-2745.95Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 P... [more]
PRU1_PRUAR5.562e-2643.92Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 S... [more]
MAL12_MALDO1.370e-2443.24Major allergen Mal d 1 OS=Malus domestica PE=1 SV=... [more]
MPAC2_CARBE1.789e-2451.24Major pollen allergen Car b 1 isoform 2 OS=Carpinu... [more]
BEV1J_BETVE5.206e-2444.59Major pollen allergen Bet v 1-J OS=Betula verrucos... [more]
BEV1F_BETVE5.206e-2444.59Major pollen allergen Bet v 1-F/I OS=Betula verruc... [more]
MPAG1_ALNGL6.799e-2442.57Major pollen allergen Aln g 1 OS=Alnus glutinosa P... [more]
BEV1E_BETVE8.880e-2444.59Major pollen allergen Bet v 1-E OS=Betula verrucos... [more]
BEV1A_BETVE1.160e-2343.92Major pollen allergen Bet v 1-A OS=Betula verrucos... [more]
PYRC1_PYRCO1.978e-2341.22Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 ... [more]

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Properties
Property NameValue
Genbank descriptionC06014B08SK RindPdig24 Citrus clementina cDNA clone C06014B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298660 ID=CX298660; Name=CX298660; organism=Citrus clementina; type=EST; length=714bp
TTATGCAGTCCCCCCAGCCAGGATGTTCAATGCCTTGGCTTCTGACAACC
TCCCCTCCAAGATTTTCCCAGATGTCGTTAAGAACGTTGAGGTCCTTGAA
GGCAACGGAGGTCCTGGAAGCATCAAGAAATTTACCATTGTTGAAGGAGG
ACAGGTCAAATACGCGAAGCACAAGATTGAAGAAGAAGACAAAGTGAATC
TTAAATTAAAGTACAGCGTGATTGAAGGGAATGATTTGGCGGATTACAAG
TTGGAAAAAATATCCTATGAGCACCAATGGAGGGCATCTCCTAATGGAGG
ATCAATCTGCAAGACCATTTGCAAGCTCCACGCCAAAGGTGAGGTGGAGG
TCACAGAAGAGCAAGCCAAAGCTGGCAAAGAAAAAGTTATCGGAGTCGTC
AAGGGTGTCGAAGCCTATCTCCAGGCAAATCTTGATGTCTGCAATTAAGA
TATACGTTTTCTGCAATATAATCAGCTGCTTCTTGCTTTCCGTATGTGTG
CGCGCTTGCTTTGCTTTAATAAGCCGTGTGTTGTTGCATATTGTTCGGCC
AAATTAAAGTACTTCCTTTATTTGAACTTGATAATAAGAACTAGCTAGCC
TGGAAGATTGATTATATAAGTGGCTTGTAAAAAGAGCTTATTTCTATCAA
TGCTTGCAGGTTTTCCTGAGTGAACTTTTCTCCAGACTACTAAGTCTCGG
GTTTCTTTCGTTTT
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