CX298665

Overview
NameCX298665
Unique NameCX298665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298665 vs. ExPASy Swiss-Prot
Match: HMT3_ARATH (Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.527e-30
Identity = 58/88 (65.91%), Postives = 76/88 (86.36%), Query Frame = 2
Query:    2 PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKSLPSA 265
            PR+IH LI+S+R++T KP+++YPNSGE Y+   KKW++S G  +EDFVSY+ KWRDAGASLFGGCCRTTPNTI+AI++VLS++  PSA
Sbjct:  254 PRYIHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKSEGESEEDFVSYVSKWRDAGASLFGGCCRTTPNTIRAIAKVLSDE--PSA 339          
BLAST of CX298665 vs. ExPASy Swiss-Prot
Match: HMT3_MAIZE (Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.801e-30
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLS 244
            PRFIHGLILS+RKVT KP++IYPNSGE Y+ E K+WVESTGV D DFVSY+ +W   GA+L GGCCRTTPNTI+AI R L+
Sbjct:  247 PRFIHGLILSIRKVTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCKDGAALIGGCCRTTPNTIRAIHRTLN 327          
BLAST of CX298665 vs. ExPASy Swiss-Prot
Match: HMT2_ARATH (Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.801e-30
Identity = 56/83 (67.47%), Postives = 70/83 (84.34%), Query Frame = 2
Query:    2 PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNK 250
            PRFI GL+L + KVTSKP+++YPNSGE+Y+A+ K+WVE+TGV DEDFVSY+ KW DAG SL GGCCRTTP TI+AI + L N+
Sbjct:  248 PRFIEGLVLEIEKVTSKPILVYPNSGESYDADRKEWVENTGVGDEDFVSYVEKWMDAGVSLLGGCCRTTPTTIRAIHKRLVNR 330          
BLAST of CX298665 vs. ExPASy Swiss-Prot
Match: HMT2_MAIZE (Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 7.576e-30
Identity = 61/84 (72.62%), Postives = 69/84 (82.14%), Query Frame = 2
Query:    2 PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKS 253
            PRFIHGLILS+RKVT KP++IYPNSGE Y+ E K+WVESTGV D DFVSY+ +W   GA L GGCCRTTPNTI+AI R L NKS
Sbjct:  247 PRFIHGLILSIRKVTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCKDGAVLIGGCCRTTPNTIRAIHRTL-NKS 329          
BLAST of CX298665 vs. ExPASy Swiss-Prot
Match: SMTA_ASTBI (Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.183e-28
Identity = 54/87 (62.07%), Postives = 73/87 (83.91%), Query Frame = 2
Query:    2 PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKSLPS 262
            PRFIH LIL ++KVT+KP++IYPNSGETY+A  K+W +++GV DEDFVSY+ KW ++GASL GGCCRTTP+TI+ I ++LS+   P+
Sbjct:  248 PRFIHDLILLLKKVTAKPIVIYPNSGETYDAIRKEWGQNSGVTDEDFVSYVDKWCESGASLVGGCCRTTPDTIRGIYKILSSGQSPT 334          
BLAST of CX298665 vs. ExPASy Swiss-Prot
Match: HMT4_MAIZE (Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26
Identity = 52/81 (64.20%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVR-DEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVL 241
            PRFIHGLILS++KVTSKP+++YPNSGETY AE  +WV+S G    +DFVS +G+WR AGA+L GGCCRT+P T++AI+R +
Sbjct:  248 PRFIHGLILSIKKVTSKPIVVYPNSGETYVAETNEWVDSDGATGTDDFVSRVGEWRRAGAALIGGCCRTSPATVRAIARAV 328          
BLAST of CX298665 vs. ExPASy Swiss-Prot
Match: HMT1_ARATH (Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.701e-19
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    2 PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNK 250
            P+FI  LI    K+T K +++YPNSGE ++ + K+W+ S    D++F  +  KWRD GA L GGCCRTTP+TI AISR L  +
Sbjct:  244 PQFIENLIRKFAKLTKKAIVVYPNSGEVWDGKAKQWLPSQCFGDDEFEMFATKWRDLGAKLIGGCCRTTPSTINAISRDLKRR 326          
BLAST of CX298665 vs. ExPASy Swiss-Prot
Match: HMT1_MAIZE (Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.900e-18
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 2
Query:    2 PRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKS 253
            P+FI G+I   RK T K + +YPNSGE ++   K+W+    +  + F +   +W++AGASL GGCCRTTP+TI+A+S++L  ++
Sbjct:  238 PQFIEGIICEFRKQTKKAIAVYPNSGEVWDGRAKRWLPVECLGHKSFDALAKRWQEAGASLIGGCCRTTPSTIRAVSKILKGRT 321          
BLAST of CX298665 vs. ExPASy Swiss-Prot
Match: HMT_BACSU (Homocysteine S-methyltransferase ybgG OS=Bacillus subtilis GN=ybgG PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.707e-11
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 2
Query:   11 IHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAIS 232
            I  LI  ++K TSKP+I+YPNSGE Y+ E K W  +     E + +    W + GA L GGCCRT P  I+ I+
Sbjct:  235 IPSLIEELKKNTSKPIIVYPNSGEQYDPETKTW--NGAACAESYGASARTWHEKGARLIGGCCRTKPENIQEIA 306          
The following BLAST results are available for this feature:
BLAST of CX298665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HMT3_ARATH1.527e-3065.91Homocysteine S-methyltransferase 3 OS=Arabidopsis ... [more]
HMT3_MAIZE5.801e-3071.60Homocysteine S-methyltransferase 3 OS=Zea mays GN=... [more]
HMT2_ARATH5.801e-3067.47Homocysteine S-methyltransferase 2 OS=Arabidopsis ... [more]
HMT2_MAIZE7.576e-3072.62Homocysteine S-methyltransferase 2 OS=Zea mays GN=... [more]
SMTA_ASTBI3.183e-2862.07Selenocysteine methyltransferase OS=Astragalus bis... [more]
HMT4_MAIZE1.747e-2664.20Homocysteine S-methyltransferase 4 OS=Zea mays GN=... [more]
HMT1_ARATH2.701e-1949.40Homocysteine S-methyltransferase 1 OS=Arabidopsis ... [more]
HMT1_MAIZE3.900e-1844.05Homocysteine S-methyltransferase 1 OS=Zea mays GN=... [more]
HMT_BACSU2.707e-1144.59Homocysteine S-methyltransferase ybgG OS=Bacillus ... [more]
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Properties
Property NameValue
Genbank descriptionC06014C01SK RindPdig24 Citrus clementina cDNA clone C06014C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298665 ID=CX298665; Name=CX298665; organism=Citrus clementina; type=EST; length=470bp
TCCTCGATTTATCCATGGACTCATACTCTCCGTTAGAAAGGTAACTAGTA
AACCTGTAATCATATATCCAAACAGTGGCGAGACCTATAATGCTGAGCTC
AAGAAGTGGGTGGAATCAACTGGAGTAAGAGATGAGGACTTTGTCTCATA
CATCGGTAAGTGGCGTGATGCGGGGGCTTCTTTATTTGGTGGATGCTGCA
GGACTACACCAAATACAATCAAAGCCATATCCAGAGTTCTATCCAACAAA
TCTTTGCCATCCGCAAATTTGAACATTCAGATGTAGATTGTAATGAGTTG
CGGAGGAGATAGTTAAAATCAGAAAATTTCCCTTTTCAGGTCTTTCAAGT
CCTAAGTGGGCAGTATAATGTAATGATTACGTTCTCAATGTACCGCATAA
TATGAATAAAATTTTCTCCTTGGCTTTTATTTTGACGTGGAGAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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