CX298668

Overview
NameCX298668
Unique NameCX298668
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14837 contig Ccv1_Contig14837:483..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: 6OMT_COPJA ((RS)-norcoclaurine 6-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 86/203 (42.36%), Postives = 125/203 (61.58%), Query Frame = 3
Query:    9 MWDFAXXXXXXXXXXXKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVKEDDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGFLRHNIINLPAVPAIIEAYP 617
            +W +            +AMA  ++++MS L+    + F+GI +LVDVGGGTG  +  I   +PHIK   +DLPHV+A +P Y  V  V GDM   +P ADA+ MK ILHDWDD+ C+ ILK C++A+P K GK+++V+IV+       +       DL M  +T  GKERTE+EWK+++ + G+  H I  + AV ++IEAYP
Sbjct:  145 IWGYMAEHPEKNQLFNEAMANDSRLIMSALVKECGNIFNGITTLVDVGGGTGTAVRNIANAFPHIKCTVYDLPHVIADSPGYSEVHCVAGDMFKFIPKADAIMMKCILHDWDDKECIEILKRCKEAVPVKGGKVIIVDIVLNVQSEHPYTKMRLTLDLDMMLNTG-GKERTEEEWKKLIHDAGYKGHKITQITAVQSVIEAYP 346          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT3_POPKI (Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.493e-42
Identity = 88/169 (52.07%), Postives = 113/169 (66.86%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVK-EDDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            K M+  +K+ M  +L  YK GF+G+ SLVDVGGGTG  ++ IV  YP IKG+NFDLPHV+A AP + GV +VGGDM  +VP ADAVFMKWI HDW DE C+R+LKNC  A+PE  GK++LVE ++    D  +        D  M AH   GKERT+KE++ +    GF
Sbjct:  177 KGMSDHSKMAMKKILESYK-GFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPAFPGVENVGGDMFVSVPKADAVFMKWICHDWSDEHCLRLLKNCYDALPE-NGKVILVECILPVAPDTSLATKGVMHVDAIMLAHNPGGKERTDKEFEGLARGAGF 343          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT1_POPKI (Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 89/169 (52.66%), Postives = 110/169 (65.09%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVK-EDDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            K M+  + I M  +L  YK GF+G+ SLVDVGGGTG  +  IV  YP IKG+NFDLPHV+  AP Y GV HVGGDM  +VPNADAVFMKWI HDW D  C++ LKNC  A+PE  GK++LVE ++    D  +        D+ M AH   GKERTEKE++ +    GF
Sbjct:  178 KGMSDHSTITMKKILETYK-GFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPNADAVFMKWICHDWSDAHCLKFLKNCYDALPE-NGKVILVECILPVAPDTSLATKGVVHVDVIMLAHNPGGKERTEKEFEGLANGAGF 344          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT1_OCIBA (Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 87/173 (50.29%), Postives = 112/173 (64.74%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGFLRHN 572
            + M+  + I M  +L  Y  GFDG++++VDVGGGTG  L  IV  YP IKG+NFDLPHV+  AP Y GV HVGGDM  +VP  DA+FMKWI HDW DE CV+ LKNC  A+P+  GK++L E V+ E  D  +        D+ M AH   GKERTEKE++ + +  GF + N
Sbjct:  176 QGMSNHSTITMKKILETYT-GFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQ-NGKVILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFN 346          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT2_POPTM (Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.407e-42
Identity = 86/169 (50.89%), Postives = 112/169 (66.27%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVK-EDDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            K M+  +K+ M  +L  YK GF+G+ SLVDVGGGTG  ++ IV  YP IKG+NFDLPHV+A AP + GV +VGGDM  +VP ADAVFMKWI HDW DE C+  LKNC  A+PE  GK++LVE ++    D  +        D+ M AH   GKERT++E++ +    GF
Sbjct:  177 KGMSVHSKMAMKKILETYK-GFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPAFPGVENVGGDMFVSVPKADAVFMKWICHDWSDEHCLTFLKNCYDALPE-NGKVILVECILPVAPDTSLATKGVMHVDVIMLAHNPGGKERTDREFESLARGAGF 343          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT1_POPTM (Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.263e-41
Identity = 88/169 (52.07%), Postives = 110/169 (65.09%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVK-EDDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            K M+  + I M  +L  YK GF+G+ SLVDVGGGTG  +  IV  YP IKG+NFDLPHV+  AP Y GV HVGGDM  +VP ADAVFMKWI HDW D  C++ LKNC  A+PE  GK++LVE ++    D  +        D+ M AH   GKERTEKE++ + +  GF
Sbjct:  178 KGMSDHSTITMKKILETYK-GFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDAHCLKFLKNCYDALPE-NGKVILVECILPVAPDTSLATKGVVHVDVIMLAHNPGGKERTEKEFEGLAKGAGF 344          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT2_OCIBA (Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.155e-41
Identity = 86/173 (49.71%), Postives = 111/173 (64.16%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGFLRHN 572
            + M+  + I M  +L  Y  GFDG++++VDVGGGTG  L  I+  YP IKG+NFDLPHVV  AP Y GV HVGGDM  +VP  DA+FMKWI HDW D  CV+ LK C +A+PE  GK++L E V+ E  D  +        D+ M AH   GKERTEKE++ + +  GF + N
Sbjct:  176 QGMSNHSTITMKKILETYT-GFDGLKTVVDVGGGTGATLNMIISKYPSIKGINFDLPHVVEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDAHCVKFLKKCYEALPE-NGKVILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQVLAKASGFKQFN 346          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT1_MEDSA (Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.801e-41
Identity = 83/169 (49.11%), Postives = 112/169 (66.27%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVK-EDDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            K M+  + I M  +L  Y  GF+G++SLVDVGGGTG  +  IV  YP IKG+NFDLPHV+  AP Y GV HVGGDM  ++P ADAVFMKWI HDW DE C++ LKNC +A+P+  GK+++ E ++    D+ +        D+ M AH   GKERT+KE++ + +  GF
Sbjct:  178 KGMSDHSTITMKKILETYT-GFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPD-NGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGF 344          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT1_CATRO (Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.801e-41
Identity = 83/169 (49.11%), Postives = 112/169 (66.27%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            + M+  + I+M  +L  Y+ GF G++++VDVGGGTG  L  IV  YP IKG+NFDLPHV+  AP Y GV HVGGDM  +VP  DA+FMKWI HDW D  C++ LKNC +A+PE  GK++L E ++ E  D+ +        D+ M AH   GKERTEKE++ + +  GF
Sbjct:  178 QGMSNHSTIIMKKILEIYQ-GFQGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVDHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLKFLKNCHEALPE-NGKVILAECLLPEAPDSTLSTQNTVHVDVIMLAHNPGGKERTEKEFEALAKGAGF 344          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: OMT1_ARATH (Quercetin 3-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.190e-41
Identity = 83/167 (49.70%), Postives = 110/167 (65.87%), Query Frame = 3
Query:   63 MACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            M+  + I M  +L  YK GF+G+ SLVDVGGG G  L  IV  YP++KG+NFDLPHV+  AP + G+ HVGGDM  +VP  DA+FMKWI HDW DE CV+ LKNC +++PE  GK++L E ++ E  D+ +        D  M AH   GKERTEKE++ + +  GF
Sbjct:  178 MSNHSTITMKKILETYK-GFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPE-DGKVILAECILPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGF 342          
The following BLAST results are available for this feature:
BLAST of CX298668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
6OMT_COPJA2.720e-4442.36(RS)-norcoclaurine 6-O-methyltransferase OS=Coptis... [more]
COMT3_POPKI1.493e-4252.07Caffeic acid 3-O-methyltransferase 3 OS=Populus ki... [more]
COMT1_POPKI3.325e-4252.66Caffeic acid 3-O-methyltransferase 1 OS=Populus ki... [more]
COMT1_OCIBA3.325e-4250.29Caffeic acid 3-O-methyltransferase 1 OS=Ocimum bas... [more]
COMT2_POPTM7.407e-4250.89Caffeic acid 3-O-methyltransferase 2 OS=Populus tr... [more]
COMT1_POPTM1.263e-4152.07Caffeic acid 3-O-methyltransferase 1 OS=Populus tr... [more]
COMT2_OCIBA2.155e-4149.71Caffeic acid 3-O-methyltransferase 2 OS=Ocimum bas... [more]
COMT1_MEDSA4.801e-4149.11Caffeic acid 3-O-methyltransferase OS=Medicago sat... [more]
COMT1_CATRO4.801e-4149.11Caffeic acid 3-O-methyltransferase OS=Catharanthus... [more]
OMT1_ARATH8.190e-4149.70Quercetin 3-O-methyltransferase 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC06014C04SK RindPdig24 Citrus clementina cDNA clone C06014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298668 ID=CX298668; Name=CX298668; organism=Citrus clementina; type=EST; length=724bp
GCTGTGAAATGTGGGATTTCGCTTCACAAAACTCTCAATTCAACAACTCG
TTCAATAAGGCCATGGCATGCACGGCAAAGATTGTGATGAGCACACTCCT
CTCACACTATAAAGACGGGTTTGATGGCATACGATCACTGGTCGACGTGG
GTGGTGGCACTGGCGAAGAGCTTGCCGAGATTGTCGAATTCTATCCACAC
ATCAAAGGTGTAAACTTTGATTTGCCACATGTTGTTGCCACAGCACCTGT
GTATGAAGGAGTCTCGCACGTCGGAGGTGACATGCTTAACGCGGTTCCTA
ATGCTGATGCAGTTTTTATGAAGTGGATATTGCATGATTGGGATGACGAA
GCCTGTGTCAGGATTCTGAAAAACTGCCGAAAAGCAATTCCGGAGAAAAC
TGGAAAGCTTGTGTTAGTCGAAATCGTTGTAAAAGAAGATGATAACGACG
TATTTGGCGACACGGCCTACTTATTTGATCTATGTATGTTTGCTCACACA
AGGTGTGGGAAGGAAAGGACTGAAAAAGAATGGAAGCAAATATTGGAAGA
AGGAGGATTCCTCCGCCATAACATCATCAACCTACCGGCTGTACCTGCCA
TTATTGAGGCCTATCCGCAGTGACATTAATTTGAAGCTCAAATAAAATTA
CAAGTTTCACTCCCACCGAATACCAACTCTTCCCCTCCCCCCCCAAAAAA
AGCATAAAGTGCATTTACGGCTAG
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