CX298671

Overview
NameCX298671
Unique NameCX298671
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX298671 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.722e-22
Identity = 56/96 (58.33%), Postives = 64/96 (66.67%), Query Frame = -1 
Query:  259 VPNSARGME----RLLTLINDIYKYVDDTVEGRAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSIPRTQLSLAEKLNTAAQM 534
            +PN   GME    RLLTLIND+YKYVD  V G+  PDN++GR +++ VASLPKL P  FD LVN             SI RTQLSLAEKLNTAAQM
Sbjct:  197 LPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNIGRFIADAVASLPKLPPQVFDNLVNDSLQDQLLLLYLSSITRTQLSLAEKLNTAAQM 292
The following BLAST results are available for this feature:
BLAST of CX298671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EIF3F_ARATH8.722e-2258.33Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionC06014C07SK RindPdig24 Citrus clementina cDNA clone C06014C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298671 ID=CX298671; Name=CX298671; organism=Citrus clementina; type=EST; length=630bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAAGTAATGCTAA
ATCTGACCAAAATGGATATTTGTTTCTCAATAGAACCCAAACCATTACAA
AGCAATTTTGTTAAAATTGGGCAACTAATTTAAACTCTAGCTTATAAAAT
ACAGCCTTTCTAGAAAGTAAATAAGCACATTCCTCAGAGTTTGGGATATA
TTAATTCAAACTCAAATCACCTTAGCACATGAATTCATCTGTCAGCGAGA
AATTATGGCATCTGAGCAGCAGTGTTCAACTTTTCTGCTAAGCTGAGCTG
GGTCCTGGGGATACTTGACAAATATAGCAAGAGCAACTGGTCCTGTAGGC
TGTCATTTACAAGCTTGTCAAAAGCTGGAGGTGACAGTTTGGGAAGGGAG
GCTACAGTCTCTGAAAGAATACGCCCTACACTATTATCAGGTACAGCACG
CCCTTCCACAGTGTCATCAACATATTTGTAGATATCGTTAATAAGAGTTA
GTAGCCGTTCCATCCCTCGTGCCGAATTCGGCACGAGGATCACAAACAAA
GTTTACTTTGACGTTGAGATTGCTGGAAAACCTGCCGGACGTATTGTAAT
GGGTCTCTTTGGAAAGGCAGTCCCTAAAAC
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