CX298675

Overview
NameCX298675
Unique NameCX298675
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig759 contig Ccv1_Contig759:1..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX298675 vs. ExPASy Swiss-Prot
Match: HBL1_MEDSA (Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=MHB1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.279e-54
Identity = 104/117 (88.89%), Postives = 111/117 (94.87%), Query Frame = 2
Query:   20 PSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 370
            PSAQKLFSFL+DS VPLEQN KLKPHAMSVF+MTCESAVQLRK+GKVTVRES+LKKLGA HFKYGVV+EHFEVTKF+LLETIKEAVPEMWSP MK+AW EAYDQLV AIKSEMKPSS
Sbjct:   44 PSAQKLFSFLKDSKVPLEQNTKLKPHAMSVFLMTCESAVQLRKSGKVTVRESSLKKLGANHFKYGVVDEHFEVTKFALLETIKEAVPEMWSPAMKNAWGEAYDQLVNAIKSEMKPSS 160          
BLAST of CX298675 vs. ExPASy Swiss-Prot
Match: HBL1_GOSHI (Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum GN=HB1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 6.942e-53
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 2
Query:   20 PSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 370
            PSA+KLFSFLRDSNVPLEQN KLKPHAMSVFVMTCESAVQLRKAGKVTVRES LKKLGA HFKYGVV+EHFEVTKF+LLETIKEAVP+MWS EMK+AW EAYD+LVAAIK EMK  S
Sbjct:   44 PSAKKLFSFLRDSNVPLEQNTKLKPHAMSVFVMTCESAVQLRKAGKVTVRESNLKKLGATHFKYGVVDEHFEVTKFALLETIKEAVPDMWSDEMKNAWGEAYDRLVAAIKIEMKACS 160          
BLAST of CX298675 vs. ExPASy Swiss-Prot
Match: HBP2_CASGL (Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.445e-52
Identity = 101/117 (86.32%), Postives = 110/117 (94.02%), Query Frame = 2
Query:   20 PSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 370
            PSAQKLFSFL+DSNVPLE+N KLK HAMSVF+MTCESAVQLRKAGKVTVRES+LKKLGA HFK+GV +EHFEVTKF+LLETIKEAVPE WSPEMK+AW EAYD+LVAAIK EMKPSS
Sbjct:   44 PSAQKLFSFLKDSNVPLERNPKLKSHAMSVFLMTCESAVQLRKAGKVTVRESSLKKLGASHFKHGVADEHFEVTKFALLETIKEAVPETWSPEMKNAWGEAYDKLVAAIKLEMKPSS 160          
BLAST of CX298675 vs. ExPASy Swiss-Prot
Match: HBL_TRETO (Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB1 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.710e-51
Identity = 100/117 (85.47%), Postives = 110/117 (94.02%), Query Frame = 2
Query:   20 PSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 370
            PSA+ LFS+L+DS +PLEQN KLKPHAM+VFVMTCESAVQLRKAGKVTVRES LK+LGA+HFK GVVNEHFE T+F+LLETIKEAVPEMWSPEMK+AW EAYDQLVAAIKSEMKPSS
Sbjct:   45 PSAKNLFSYLKDSPIPLEQNPKLKPHAMTVFVMTCESAVQLRKAGKVTVRESNLKRLGAIHFKNGVVNEHFE-TRFALLETIKEAVPEMWSPEMKNAWGEAYDQLVAAIKSEMKPSS 160          
BLAST of CX298675 vs. ExPASy Swiss-Prot
Match: HBPL_PARRI (Non-legume hemoglobin OS=Parasponia rigida PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.212e-50
Identity = 96/117 (82.05%), Postives = 107/117 (91.45%), Query Frame = 2
Query:   20 PSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 370
            PSA+ LFS+L+DS VPLEQN KLKPHA +VFVMTCESAVQLRKAGK TV+ES LK++GA+HFK GVVNEHFEVT+F+LLETIKEAVPEMWSPEMK+AW  AYDQLVAAIK EMKPSS
Sbjct:   45 PSAKNLFSYLKDSPVPLEQNPKLKPHATTVFVMTCESAVQLRKAGKATVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIKEAVPEMWSPEMKNAWGVAYDQLVAAIKFEMKPSS 161          
BLAST of CX298675 vs. ExPASy Swiss-Prot
Match: HBPL_PARAD (Non-legume hemoglobin OS=Parasponia andersonii PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.212e-50
Identity = 96/117 (82.05%), Postives = 107/117 (91.45%), Query Frame = 2
Query:   20 PSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 370
            PSA+ LFS+L+DS VPLEQN KLKPHA +VFVMTCESAVQLRKAGK TV+ES LK++GA+HFK GVVNEHFEVT+F+LLETIKEAVPEMWSPEMK+AW  AYDQLVAAIK EMKPSS
Sbjct:   45 PSAKNLFSYLKDSPVPLEQNPKLKPHATTVFVMTCESAVQLRKAGKATVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIKEAVPEMWSPEMKNAWGVAYDQLVAAIKFEMKPSS 161          
BLAST of CX298675 vs. ExPASy Swiss-Prot
Match: HBL1_ARATH (Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana GN=AHB1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.358e-47
Identity = 91/117 (77.78%), Postives = 103/117 (88.03%), Query Frame = 2
Query:   20 PSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 370
            P+ +K+FSFLRDS +P EQN KLKPHAMSVFVM CESAVQLRK GKVTVRE+TLK+LGA H KYGVV+EHFEV K++LLETIKEAVPEMWSPEMK AW +AYD LVAAIK+EM  S+
Sbjct:   44 PTTKKMFSFLRDSPIPAEQNPKLKPHAMSVFVMCCESAVQLRKTGKVTVRETTLKRLGASHSKYGVVDEHFEVAKYALLETIKEAVPEMWSPEMKVAWGQAYDHLVAAIKAEMNLSN 160          
BLAST of CX298675 vs. ExPASy Swiss-Prot
Match: HBL2_ORYSJ (Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. japonica GN=HB2 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.434e-47
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 2
Query:   20 PSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVP-EMWSPEMKSAWSEAYDQLVAAIKSEMKPS 367
            PSA ++FSFLR+S+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVR++TLK+LGA HFKYGV + HFEVT+F+LLETIKEAVP +MWSP MKSAWSEAY+QLVAAIK EMKP+
Sbjct:   52 PSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDAHFEVTRFALLETIKEAVPVDMWSPAMKSAWSEAYNQLVAAIKQEMKPA 168          
BLAST of CX298675 vs. ExPASy Swiss-Prot
Match: HBL1_ORYSJ (Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. japonica GN=HB1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.328e-45
Identity = 89/117 (76.07%), Postives = 103/117 (88.03%), Query Frame = 2
Query:   20 PSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVP-EMWSPEMKSAWSEAYDQLVAAIKSEMKPS 367
            PSA ++FSFLR+S+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVR++TLK+LGA H KYGV + HFEV KF+LL+TIKE VP +MWSP MKSAWSEAYD LVAAIK EMKP+
Sbjct:   49 PSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVGDAHFEVVKFALLDTIKEEVPADMWSPAMKSAWSEAYDHLVAAIKQEMKPA 165          
BLAST of CX298675 vs. ExPASy Swiss-Prot
Match: HBL_MAIZE (Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 89/118 (75.42%), Postives = 104/118 (88.14%), Query Frame = 2
Query:   20 PSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVP-EMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 370
            PSA+++FSFLRDS+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVRE+TLK+LGA H +YGV + HFEVT F+LLETIKEA+P +MWS EMK AW+EAY QLVAAIK EMKP +
Sbjct:   48 PSAEQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKPDA 165          
The following BLAST results are available for this feature:
BLAST of CX298675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBL1_MEDSA6.279e-5488.89Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=M... [more]
HBL1_GOSHI6.942e-5388.03Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum G... [more]
HBP2_CASGL3.445e-5286.32Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1[more]
HBL_TRETO1.710e-5185.47Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB... [more]
HBPL_PARRI4.212e-5082.05Non-legume hemoglobin OS=Parasponia rigida PE=1 SV... [more]
HBPL_PARAD4.212e-5082.05Non-legume hemoglobin OS=Parasponia andersonii PE=... [more]
HBL1_ARATH4.358e-4777.78Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana... [more]
HBL2_ORYSJ7.434e-4778.63Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. ... [more]
HBL1_ORYSJ5.328e-4576.07Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. ... [more]
HBL_MAIZE6.958e-4575.42Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC06014C11SK RindPdig24 Citrus clementina cDNA clone C06014C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298675 ID=CX298675; Name=CX298675; organism=Citrus clementina; type=EST; length=616bp
GATTCGGCCGAGGGATTGCCCATCAGCCCAAAAGCTGTTCTCATTCTTGA
GAGACTCAAATGTGCCTCTAGAGCAGAACCAGAAGCTCAAGCCCCACGCC
ATGTCTGTTTTTGTTATGACGTGTGAATCAGCAGTGCAACTGAGGAAAGC
AGGCAAAGTGACAGTAAGAGAATCAACTCTAAAAAAATTAGGAGCTGTCC
ACTTCAAATATGGTGTTGTTAATGAGCATTTTGAGGTCACAAAATTTTCA
CTACTGGAAACCATAAAAGAGGCAGTACCAGAGATGTGGTCGCCAGAAAT
GAAGAGTGCCTGGTCAGAAGCTTACGATCAATTGGTTGCAGCCATTAAGT
CGGAGATGAAGCCCTCCTCTTAGAGTTTCCTGAACAAATTTCTCTTCCCC
TGTAATATTAAAGAATTTCAAAAAGAGCATTGTTTATTTGTTAGTCTTTA
CATTGGTACCCACGTGTGTTTCTTGTGCCTTTTTGTATAATCACTTGTGT
TCAACTCTTGAATCTTAATAACAAAAGTTTGTTCCTAATGTTTGCATTGA
TGTATGAATTCATCGAACGGTTAATAGTATAAGGAAAAAGCTATTTACCC
CAAAAAAAAAAAAAAA
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