CX298677

Overview
NameCX298677
Unique NameCX298677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length580
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298677 vs. ExPASy Swiss-Prot
Match: CC026_MOUSE (Uncharacterized protein C3orf26 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 43/106 (40.57%), Postives = 69/106 (65.09%), Query Frame = 1
Query:   67 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAG-GTPSRIKKLIDIEALGLSRLSVIVLDMH-TDVKGYSLFTLPQVRDEFWDL 378
            S  +LI+ SSA+R++EL++ L +   +   +KLF+KH+KV+EQV LL+ RV   G GTP RIK+L+  + L L+ L  +V D +  D K   +  +P++R E ++L
Sbjct:  152 SVLMLILCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVQEQVKLLEKRVIHLGVGTPGRIKELVKQDGLHLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFEL 257          
BLAST of CX298677 vs. ExPASy Swiss-Prot
Match: CC026_RAT (Uncharacterized protein C3orf26 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 41/106 (38.68%), Postives = 69/106 (65.09%), Query Frame = 1
Query:   67 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNR-VNFAGGTPSRIKKLIDIEALGLSRLSVIVLDMH-TDVKGYSLFTLPQVRDEFWDL 378
            S  +LI+ SSA+R++EL++ L +   +   +KLF+KH+KV+EQV LL+ R ++   GTP RIK+L+  + L L+ L  +V D +  D K   +  +P++R E ++L
Sbjct:  152 SVLMLILCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVQEQVKLLEKRAIHLGVGTPGRIKELVKQDGLNLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFEL 257          
BLAST of CX298677 vs. ExPASy Swiss-Prot
Match: CC026_HUMAN (Uncharacterized protein C3orf26 OS=Homo sapiens GN=C3orf26 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 1
Query:   67 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAG-GTPSRIKKLIDIEALGLSRLSVIVLDMH-TDVKGYSLFTLPQVRDEFWDL 378
            S  +LII SSA+R++EL++ + +   +   +KLF+KH+KV+ QV LL+ RV   G GTP RIK+L+    L LS L  +V D +  D K   +  +P++R E ++L
Sbjct:  155 SVLMLIICSSAVRALELIRSMTAFRGDGKVIKLFAKHIKVQAQVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFEL 260          
BLAST of CX298677 vs. ExPASy Swiss-Prot
Match: CC026_BOVIN (Uncharacterized protein C3orf26 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = 1
Query:   67 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAG-GTPSRIKKLIDIEALGLSRLSVIVLDMH-TDVKGYSLFTLPQVRDEFWDL 378
            S  +LII  SA+R++EL++ + +   +   +KLF+KH+KV+EQV LL+ RV   G GTP RIK+LI    L L+ L  ++ D +  D K   +  +P++R E ++L
Sbjct:  155 SVLMLIICGSAIRAVELIRSMTAFKGDSKVMKLFAKHIKVQEQVKLLEKRVVHLGVGTPGRIKELIKQGGLHLNPLKFLIFDWNWRDQKLRRMMDIPEIRKEVFEL 260          
BLAST of CX298677 vs. ExPASy Swiss-Prot
Match: CC026_XENLA (Uncharacterized protein C3orf26 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 39/106 (36.79%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   67 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQVSLLKNRVNFAG-GTPSRIKKLIDIEALGLSRLSVIVLDMH-TDVKGYSLFTLPQVRDEFWDL 378
            S  +L++ SSA R++EL+K + +   +   +KLF+KH+K+++Q++LL+  V   G GTP RIK LID + L L  +  +V D +  D K   +  +P+V+ E  +L
Sbjct:  153 SVLLLVVCSSAHRTLELIKLINAFKADTKVMKLFAKHIKIKDQINLLEKNVTHIGIGTPGRIKALIDQDGLSLESMKYLVFDWNWRDQKLRRMMDIPEVKKETLEL 258          
BLAST of CX298677 vs. ExPASy Swiss-Prot
Match: CC026_DANRE (Uncharacterized protein C3orf26 homolog OS=Danio rerio GN=zgc:101814 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   67 SPAVLIISSSALRSIELLKGLRSLTKECHAVKLFSKHMKVEEQV-SLLKNRVNFAGGTPSRIKKLIDIEALGLSRLSVIVLDM-HTDVKGYSLFTLPQVRDE 366
            S  +LI+  SALR+I+L+K L +   +   +KLF+KH+KVEEQ+ SL K   + A GTP RI  L++ E L +  L  +VLD  + D K   +  +P+V+ +
Sbjct:  167 SVVLLIVCGSALRTIDLIKQLVTFKGQAKVLKLFAKHIKVEEQIKSLSKGVTHIAVGTPGRICALLEKEGLTVQGLRYLVLDWNYRDQKQRRMVDVPEVKGD 268          
The following BLAST results are available for this feature:
BLAST of CX298677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CC026_MOUSE9.593e-1440.57Uncharacterized protein C3orf26 homolog OS=Mus mus... [more]
CC026_RAT1.636e-1338.68Uncharacterized protein C3orf26 homolog OS=Rattus ... [more]
CC026_HUMAN4.761e-1340.57Uncharacterized protein C3orf26 OS=Homo sapiens GN... [more]
CC026_BOVIN6.218e-1339.62Uncharacterized protein C3orf26 homolog OS=Bos tau... [more]
CC026_XENLA3.086e-1236.79Uncharacterized protein C3orf26 homolog OS=Xenopus... [more]
CC026_DANRE5.820e-1140.20Uncharacterized protein C3orf26 homolog OS=Danio r... [more]
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Properties
Property NameValue
Genbank descriptionC06014D01SK RindPdig24 Citrus clementina cDNA clone C06014D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298677 ID=CX298677; Name=CX298677; organism=Citrus clementina; type=EST; length=580bp
TTTGGGTCATTATGGAAAGAAGTGCTAACTGAAGGACAGCTATTGGAAGG
GAAAATTGATCCAGGGTCTCCGGCAGTTCTCATTATTAGCTCCTCTGCCT
TGAGATCTATAGAGCTTTTAAAGGGTTTGCGCTCGCTGACTAAGGAGTGC
CATGCTGTGAAGCTATTCTCAAAGCACATGAAAGTTGAAGAGCAGGTATC
CTTGTTAAAGAACCGGGTTAATTTTGCTGGTGGTACACCAAGCAGGATAA
AGAAGTTAATCGACATTGAGGCATTGGGGCTTTCAAGGTTATCTGTGATT
GTACTTGACATGCACACAGATGTTAAGGGCTATTCCTTGTTTACACTGCC
TCAAGTCAGAGATGAATTTTGGGACTTGTACAAAACCTACTTTCACCATC
GGCTGCTGCAACGTGATCTAGGAATATCTCTATATGGTCCAATTCCGAAT
GGTAATGAGTTTAAGGGTAGGAGGAAAAATCTTGAGGAATAAAATTTTGT
TGGTTTAATGTAAATTTTGATTGATGCTCATCTTTCAATCAATTTAAAAA
TTTTCCAAAAAAAAAAAAAAAAAAAAAAAA
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