CX298681

Overview
NameCX298681
Unique NameCX298681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298681 vs. ExPASy Swiss-Prot
Match: RL9_PEA (60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.090e-88
Identity = 160/194 (82.47%), Postives = 181/194 (93.30%), Query Frame = 2
Query:   44 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 625
            MKTILSSETM IP+GV +K+NAK+IEVEGPRGKL R+FKHLNLDF L+TD E GK+KLKIDAWFGSRKTSAAIRTALSHV+NLITGVTKG+RYKMRFVYA FPINASI N +KSIEIRNFLGEKKVR+V++LDGV+++RS+KVKDE++LDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEKG +V E+
Sbjct:    1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITD-ENGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGAVVVEE 193          
BLAST of CX298681 vs. ExPASy Swiss-Prot
Match: RL91_ARATH (60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3)

HSP 1 Score: 319.701 bits (818), Expect = 9.600e-87
Identity = 156/194 (80.41%), Postives = 178/194 (91.75%), Query Frame = 2
Query:   44 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 625
            MKTILSSETM+IP+ V +K++AK+IEVEGPRGKL R+FKHLNLDF L+ D ETGK+KLKID+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNFLGEKKVR+VEMLDGVT++RS+KVKDE++LDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEK  IV E+
Sbjct:    1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194          
BLAST of CX298681 vs. ExPASy Swiss-Prot
Match: RL9_ORYSJ (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3)

HSP 1 Score: 315.849 bits (808), Expect = 1.386e-85
Identity = 155/190 (81.58%), Postives = 177/190 (93.16%), Query Frame = 2
Query:   44 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 613
            MKTIL+SETMEIPEGV V++ AK++ VEGPRGKL+RNFKHLNLDF L+  G    RKL++DAWFG+R+T AAIRTA+SHVQNLITGVTKGYRYKMRFVYAHFPINASI N++ +IEIRNFLGEKKVR+V+ML+GVT+LRS+KVKDEL+LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVS+KGTI
Sbjct:    1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGG----RKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTI 186          
BLAST of CX298681 vs. ExPASy Swiss-Prot
Match: RL92_ARATH (60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.810e-85
Identity = 155/194 (79.90%), Postives = 177/194 (91.24%), Query Frame = 2
Query:   44 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 625
            MKTILSSETM+IP+GV +K+NAK+IEVEGPRGKL+R+FKHLNLDF L+ D  TGKR+LKID+WFGSRKTSA+IRTALSHV NLI GVT+G+ Y+MRFVYAHFPINASI   +KSIEIRNFLGEKKVR+VEMLDGV ++RS+KVKDE+IL+GNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEKG I  E+
Sbjct:    1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194          
BLAST of CX298681 vs. ExPASy Swiss-Prot
Match: RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.169e-58
Identity = 113/191 (59.16%), Postives = 139/191 (72.77%), Query Frame = 2
Query:   44 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIV 616
            MKTILS++T++IP+ V V +  + + V+GPRG L R F H+NL+  L+   +   +KL++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+V
Sbjct:    1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQ---KKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVV 188          
BLAST of CX298681 vs. ExPASy Swiss-Prot
Match: RL9_MOUSE (60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.724e-57
Identity = 113/194 (58.25%), Postives = 141/194 (72.68%), Query Frame = 2
Query:   44 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 625
            MKTILS++T++IPE V++ +  + + V+GPRG L R+F H+N++  L+      K++L++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CX298681 vs. ExPASy Swiss-Prot
Match: RL9_MACFA (60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.558e-57
Identity = 114/194 (58.76%), Postives = 140/194 (72.16%), Query Frame = 2
Query:   44 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 625
            MKTILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K++L++D W+G+RK  A IRT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CX298681 vs. ExPASy Swiss-Prot
Match: RL9_BOVIN (60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.558e-57
Identity = 113/194 (58.25%), Postives = 140/194 (72.16%), Query Frame = 2
Query:   44 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 625
            MKTILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K++L++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CX298681 vs. ExPASy Swiss-Prot
Match: RL9_RAT (60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.647e-57
Identity = 113/194 (58.25%), Postives = 140/194 (72.16%), Query Frame = 2
Query:   44 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 625
            MKTILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K++L++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQPD 191          
BLAST of CX298681 vs. ExPASy Swiss-Prot
Match: RL9_HUMAN (60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.647e-57
Identity = 113/194 (58.25%), Postives = 140/194 (72.16%), Query Frame = 2
Query:   44 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 625
            MKTILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K++L++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
The following BLAST results are available for this feature:
BLAST of CX298681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL9_PEA5.090e-8882.4760S ribosomal protein L9 OS=Pisum sativum GN=RPL9 ... [more]
RL91_ARATH9.600e-8780.4160S ribosomal protein L9-1 OS=Arabidopsis thaliana... [more]
RL9_ORYSJ1.386e-8581.5860S ribosomal protein L9 OS=Oryza sativa subsp. ja... [more]
RL92_ARATH1.810e-8579.9060S ribosomal protein L9-2 OS=Arabidopsis thaliana... [more]
RL9_ICTPU7.169e-5859.1660S ribosomal protein L9 OS=Ictalurus punctatus GN... [more]
RL9_MOUSE2.724e-5758.2560S ribosomal protein L9 OS=Mus musculus GN=Rpl9 P... [more]
RL9_MACFA3.558e-5758.7660S ribosomal protein L9 OS=Macaca fascicularis GN... [more]
RL9_BOVIN3.558e-5758.2560S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=... [more]
RL9_RAT4.647e-5758.2560S ribosomal protein L9 OS=Rattus norvegicus GN=R... [more]
RL9_HUMAN4.647e-5758.2560S ribosomal protein L9 OS=Homo sapiens GN=RPL9 P... [more]

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Properties
Property NameValue
Genbank descriptionC06014D05SK RindPdig24 Citrus clementina cDNA clone C06014D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298681 ID=CX298681; Name=CX298681; organism=Citrus clementina; type=EST; length=707bp
GAGGAAGGAGCTGAGCCGCAGCAGAGGCAGAGCAGCTTTCATCATGAAGA
CAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGGGTGAAAGTAAAG
ATAAATGCGAAGATAATAGAAGTAGAGGGACCTAGAGGTAAGCTTAGCCG
CAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTGATGGGGAAA
CTGGGAAGCGGAAGCTGAAGATCGACGCATGGTTTGGGTCTCGCAAGACC
AGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCTCATCACTGG
GGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACGCTCACTTTC
CCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAGATCCGTAAC
TTTCTAGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGACGGTGTTAC
CGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTGATGGGAATG
ACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAGAAATGCCAT
GTGAAGAACAAAGATATCAGGAAATTCTTAGACGGGATCTATGTCAGTGA
GAAGGGCACAATTGTTGGAGAGGATTAGTTAGCTTTCAAATTTTATGTCA
CATTATTATCATGAAATTGGTATTAATCTTGCTCTTTTTGCCCTGTGTTG
GGGAAGT
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