CX298696

Overview
NameCX298696
Unique NameCX298696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX298696_ssr644 microsatellite CX298696_ssr644:644..653. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX298696 vs. ExPASy Swiss-Prot
Match: ARD3_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Arabidopsis thaliana GN=ARD3 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.027e-64
Identity = 106/126 (84.13%), Postives = 116/126 (92.06%), Query Frame = 1
Query:    1 REDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAG 378
            RE RGYSYMDFCEVCPEKLPNYE K+K+FFEEHLHTDEEIRYCVAGSGYFDVRD NE WIR+WVKKGGMIVLPAG YHRFT+D+DNYIKAMRLFVG+PVWTP+NRPHDHLPARK Y+ NF++   G
Sbjct:   67 RESRGYSYMDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAGSGYFDVRDRNEAWIRVWVKKGGMIVLPAGIYHRFTVDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYIDNFVKVNEG 192          
BLAST of CX298696 vs. ExPASy Swiss-Prot
Match: ARD2_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Arabidopsis thaliana GN=ARD2 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 9.812e-62
Identity = 104/121 (85.95%), Postives = 113/121 (93.39%), Query Frame = 1
Query:    1 REDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFL 363
            RE RGYSYMDFCEVCPEKLPNYE K+K+FFEEHLHTDEEIRYCVAG+GYFDVRD NE WIR+ VKKGGMIVLPAG YHRFT+D+DNYIKAMRLFVG+PVWTP+NRPHDHLPARK YV NF+
Sbjct:   67 RESRGYSYMDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAGTGYFDVRDRNEAWIRVLVKKGGMIVLPAGIYHRFTVDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVDNFM 187          
BLAST of CX298696 vs. ExPASy Swiss-Prot
Match: ARD1_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Arabidopsis thaliana GN=ARD1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.384e-60
Identity = 104/134 (77.61%), Postives = 117/134 (87.31%), Query Frame = 1
Query:    1 REDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAGDSPINAAA 402
            RE RGYSYMD CEVCPEKLPNYEEK+K FFEEHLH DEEIRYC+AGSGYFDVRD N+ WIR+WVKKGG+IV PAG YHRFT+D+DNY+KAMRLFVG PVWT +NRPHDHLPARK Y++ FL K  GD  I+A+A
Sbjct:   67 RESRGYSYMDLCEVCPEKLPNYEEKVKMFFEEHLHIDEEIRYCLAGSGYFDVRDLNDIWIRVWVKKGGLIVFPAGIYHRFTVDSDNYMKAMRLFVGGPVWTAYNRPHDHLPARKAYMKKFL-KVIGDRNIDASA 199          
BLAST of CX298696 vs. ExPASy Swiss-Prot
Match: ARD2_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. japonica GN=ARD2 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.199e-59
Identity = 100/123 (81.30%), Postives = 112/123 (91.06%), Query Frame = 1
Query:    1 REDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQK 369
            RE RGYSYMD C+VCPEKLPNYE K+KNFFEEHLHTDEEIRYC+ GSGYFDVRD N++WIR+ VKKGGMIVLPAG YHRFTLD+DNYIKAMRLFVG+PVWTP+NRPHDHLPARK YV+  + +
Sbjct:   67 REARGYSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVEKIINR 189          
BLAST of CX298696 vs. ExPASy Swiss-Prot
Match: ARD2_ORYSI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. indica GN=ARD2 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.199e-59
Identity = 100/123 (81.30%), Postives = 112/123 (91.06%), Query Frame = 1
Query:    1 REDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQK 369
            RE RGYSYMD C+VCPEKLPNYE K+KNFFEEHLHTDEEIRYC+ GSGYFDVRD N++WIR+ VKKGGMIVLPAG YHRFTLD+DNYIKAMRLFVG+PVWTP+NRPHDHLPARK YV+  + +
Sbjct:   67 REARGYSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVEKIINR 189          
BLAST of CX298696 vs. ExPASy Swiss-Prot
Match: ARD1_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Oryza sativa subsp. japonica GN=ARD1 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.490e-59
Identity = 101/130 (77.69%), Postives = 114/130 (87.69%), Query Frame = 1
Query:    1 REDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAGDSPI 390
            RE RGYSY+D C+VCPEKLPNYE KIK+FFEEHLHTDEEIRYC+ GSGYFDVRD N++WIRI +KKGGMIVLPAG YHRFTLDTDNYIKAMRLFVGDPVWTP+NRPHDHLPARK ++   L+ E  +  +
Sbjct:   67 REARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRIALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARKEFLAKLLKSEGENQAV 196          
BLAST of CX298696 vs. ExPASy Swiss-Prot
Match: ARD1_ORYSI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Oryza sativa subsp. indica GN=ARD1 PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.490e-59
Identity = 101/130 (77.69%), Postives = 114/130 (87.69%), Query Frame = 1
Query:    1 REDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAGDSPI 390
            RE RGYSY+D C+VCPEKLPNYE KIK+FFEEHLHTDEEIRYC+ GSGYFDVRD N++WIRI +KKGGMIVLPAG YHRFTLDTDNYIKAMRLFVGDPVWTP+NRPHDHLPARK ++   L+ E  +  +
Sbjct:   67 REARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRIALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARKEFLAKLLKSEGENQAV 196          
BLAST of CX298696 vs. ExPASy Swiss-Prot
Match: ARD4_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana GN=ARD4 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.051e-50
Identity = 84/123 (68.29%), Postives = 100/123 (81.30%), Query Frame = 1
Query:    1 REDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQK 369
            REDRGY YMD  ++CPEK+ NYEEK+KNFF EH+H DEEIRYC+AGSGYFDVRD +++WIRIW++ G +IVLPAG YHRFTLD  NYIK MRLFVG+PVWTP+NRP +  P RK Y+     K
Sbjct:   57 REDRGYDYMDLLDLCPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWMQPGDLIVLPAGIYHRFTLDASNYIKLMRLFVGEPVWTPYNRPQEEHPVRKKYIHGLTYK 179          
BLAST of CX298696 vs. ExPASy Swiss-Prot
Match: ARD3_ORYSJ (Putative 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Oryza sativa subsp. japonica GN=ARD3 PE=3 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.122e-48
Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 1
Query:    1 REDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQ 354
            RE RGY +MD  E+ PEK+PNYE  IK FFEEHLHTDEE+RYC+ GSGYFDVRD N+KW+R+ V+KG +IV+PAG YHRFTLDT+NYIK MRLF G P WT +NRPHDHLP RK Y++
Sbjct:   69 REQRGYLHMDIVELTPEKMPNYEVMIKRFFEEHLHTDEEVRYCLDGSGYFDVRDENDKWVRVSVRKGALIVVPAGIYHRFTLDTNNYIKTMRLFSGGPDWTAYNRPHDHLPERKKYLE 186          
BLAST of CX298696 vs. ExPASy Swiss-Prot
Match: ARD4_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Oryza sativa subsp. japonica GN=ARD4 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.346e-47
Identity = 78/119 (65.55%), Postives = 100/119 (84.03%), Query Frame = 1
Query:    1 REDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQN 357
            R +RGYSY D  E+CP+KL NYEEK+K+F+ EH+H DEEIRYC+ GSGYFDVRD ++KWIRIW+K+G MI+LPAG YHRF +D++NYIK MRLF+G+PVWT +NRP +  P R+ YV+N
Sbjct:   54 RRERGYSYFDLTEICPDKLENYEEKLKSFYCEHIHADEEIRYCLEGSGYFDVRDKDDKWIRIWIKEGDMIILPAGIYHRFIVDSNNYIKLMRLFIGEPVWTAYNRPQEDHPVRQEYVKN 172          
The following BLAST results are available for this feature:
BLAST of CX298696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
ARD3_ARATH8.027e-6484.131,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ARATH9.812e-6285.951,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ARATH5.384e-6077.611,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ORYSJ1.199e-5981.301,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ORYSI1.199e-5981.301,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ORYSJ3.490e-5977.691,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ORYSI3.490e-5977.691,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD4_ARATH5.051e-5068.291,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD3_ORYSJ2.122e-4870.34Putative 1,2-dihydroxy-3-keto-5-methylthiopentene ... [more]
ARD4_ORYSJ2.346e-4765.551,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]

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Properties
Property NameValue
Genbank descriptionC06014E09SK RindPdig24 Citrus clementina cDNA clone C06014E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298696 ID=CX298696; Name=CX298696; organism=Citrus clementina; type=EST; length=677bp
CGTGAAGATCGCGGATATTCTTACATGGACTTTTGTGAGGTTTGCCCAGA
AAAACTGCCAAATTATGAAGAGAAGATCAAAAACTTTTTCGAAGAACATC
TTCATACAGATGAAGAGATCCGCTACTGTGTGGCAGGAAGTGGTTACTTT
GATGTCAGGGACCATAATGAAAAATGGATTCGCATATGGGTAAAGAAAGG
AGGAATGATTGTTTTACCTGCTGGATGTTACCATCGCTTTACTTTGGATA
CAGACAACTATATCAAGGCTATGCGTCTGTTTGTAGGTGATCCCGTTTGG
ACTCCATTCAACCGTCCCCATGATCATTTACCCGCAAGGAAGGGATATGT
TCAAAATTTCTTGCAGAAGGAAGCTGGTGACAGCCCTATCAATGCTGCTG
CGTAATTTGTGCAATTCCTTGCTCATTGGATCAATACTACTGGCTTTAAT
AAATAAAGAAACTTCTGTTTATATGGTTTGTCTGTGTCTGAGGCTCCTGG
AGTTACCTGTGTGGTTTAATTGCTTGTGTAGCATCTCTGCTTGCTTGGTT
GCAGCCACTGCTGTAAACTCACCATGAATATCTGTGTCCTTCATTTTCTG
TATGCAAGAGTACCATATATATTATAATACATTCTAATATTGAATATATA
TATGTAGATTGCTGCTTGTGTCACGTT
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