CX298700

Overview
NameCX298700
Unique NameCX298700
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig725 contig Ccv1_Contig725:259..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX298700 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 5.566e-51
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 2 
Query:    2 GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 319
            GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTDENLLSQIKDGF  GKDLVVSV  AMGEE+I +LKDIGPK
Sbjct:   54 GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159
[Close]
BLAST of CX298700 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 5.566e-51
Identity = 97/106 (91.51%), Postives = 98/106 (92.45%), Query Frame = 2 
Query:    2 GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 319
            GHAKCHFV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTDENLLS IKDGF  GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   54 GHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159
[Close]
BLAST of CX298700 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 7.270e-51
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 2 
Query:    2 GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 319
            GHAKCHFV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD++LLSQIKDGF  GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   54 GHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159
[Close]
BLAST of CX298700 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.240e-50
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 2 
Query:    2 GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 319
            GHAKCHFV IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDENLL Q+KDGF+ GKDLVVSV  AMGEEQINA+KD+G K
Sbjct:   54 GHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKDVGTK 159
[Close]
BLAST of CX298700 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.115e-50
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 2 
Query:    2 GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 319
            GHAKCHFV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+NLL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   54 GHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159
[Close]
BLAST of CX298700 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 2.762e-50
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 2 
Query:    2 GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 319
            GHAKCHFV IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL Q+KDGF+ GKDLVVSV  AMGEEQINA+KDIG K
Sbjct:   54 GHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTK 159
[Close]
BLAST of CX298700 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.050e-49
Identity = 95/106 (89.62%), Postives = 98/106 (92.45%), Query Frame = 2 
Query:    2 GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 319
            GHAKCHFV IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD+ LL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   54 GHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159
[Close]
BLAST of CX298700 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 1.791e-49
Identity = 92/106 (86.79%), Postives = 100/106 (94.34%), Query Frame = 2 
Query:    2 GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 319
            GHAKCHFV IDIFNGKKLEDIVPSSHNCD+PHV RT+YQLIDISEDGFVSLLT +GNTKDDLRLPTDE L++QIK+GFESGKDLVV+VQ AMGEEQI ALKD+GPK
Sbjct:   55 GHAKCHFVAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160
[Close]
BLAST of CX298700 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.054e-49
Identity = 93/106 (87.74%), Postives = 99/106 (93.40%), Query Frame = 2 
Query:    2 GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 319
            GHAKCHFV IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NG+TKDDL+LPTD++LL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   54 GHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159
[Close]
BLAST of CX298700 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.516e-48
Identity = 91/106 (85.85%), Postives = 96/106 (90.57%), Query Frame = 2 
Query:    2 GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 319
            GHAKCHFV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q+KDGF  GKDLV+SV  AMGEEQI  +KDIGPK
Sbjct:   54 GHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159
The following BLAST results are available for this feature:
BLAST of CX298700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A_MANES5.566e-5191.51Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A3_SOLLC5.566e-5191.51Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A4_SOLTU7.270e-5190.57Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A2_SOLLC1.240e-5088.68Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A2_NICPL2.115e-5090.57Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A3_SOLTU2.762e-5088.68Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A_SENVE1.050e-4989.62Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A_MAIZE1.791e-4986.79Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A2_MEDSA3.054e-4987.74Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A5_SOLTU1.516e-4885.85Eukaryotic translation initiation factor 5A-5 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC06014F01SK RindPdig24 Citrus clementina cDNA clone C06014F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298700 ID=CX298700; Name=CX298700; organism=Citrus clementina; type=EST; length=506bp
CGGTCATGCTAAGTGTCACTTTGTAGGAATTGACATCTTCAATGGCAAGA
AGCTTGAGGATATTGTTCCCTCTTCCCACAACTGTGATGTTCCTCATGTC
ACTCGCACTGACTACCAGCTGATTGATATCTCTGAGGATGGATTTGTTAG
CCTGCTGACTGAGAATGGCAATACCAAGGATGACCTGAGACTTCCAACTG
ATGAAAATCTGCTTTCACAGATCAAGGATGGATTTGAGAGTGGGAAAGAT
CTGGTTGTCTCAGTTCAGTGTGCTATGGGAGAGGAGCAGATCAATGCCCT
GAAGGACATTGGCCCCAAGTAAAAGACTTTTTGCTTGATCGAGAAGCAGA
TTGCTGAAAGCTGTGGGAAGGTGGATAGTAGTGTAGCTTACTGGTGTCCG
GTTTCAAGATGAATGTCATCATTTCATATAAAATGACTCTTACCATATTA
TTAATTGTTTTCTATCGACAATATTTTTATTCTGTTAAAAAAAAAAAAAA
AAAAAA
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