CX298703

Overview
NameCX298703
Unique NameCX298703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298703 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.504e-13
Identity = 35/40 (87.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 SGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 120
            SGKMTKDLALIIHGSK++R+HYLNTEEFIDAVAD+L+ARL
Sbjct:  371 SGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410          
BLAST of CX298703 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.663e-12
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1
Query:    1 SGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 123
            +GKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L ARLS
Sbjct:  372 AGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLS 412          
BLAST of CX298703 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.663e-12
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 1
Query:    1 SGKMTKDLALII-HGSKMTREHYLNTEEFIDAVADDLRARL 120
            SGKMTKDLALII HGSK++REHYLNTEEFIDAVAD+L+ARL
Sbjct:  371 SGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKARL 411          
BLAST of CX298703 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.705e-12
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 1
Query:    1 SGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 123
            SGKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L+ ++S
Sbjct:  392 SGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKIS 432          
The following BLAST results are available for this feature:
BLAST of CX298703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IDHC_TOBAC1.504e-1387.50Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOYBN1.663e-1282.93Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHC_SOLTU1.663e-1287.80Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA3.705e-1278.05Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
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Properties
Property NameValue
Genbank descriptionC06014F04SK RindPdig24 Citrus clementina cDNA clone C06014F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298703 ID=CX298703; Name=CX298703; organism=Citrus clementina; type=EST; length=496bp
TCTGGGAAGATGACCAAGGATCTTGCACTTATTATCCATGGATCTAAGAT
GACTAGGGAACACTATCTGAATACTGAAGAGTTCATTGATGCTGTGGCCG
ACGATCTAAGAGCAAGACTCTCTGGCAAAGCATGATTTTTTTGTTGCAGA
TGCTACACATTCAAAGGTAAAGACTTGGGGAAGCTTCCTTTGGTTATCTT
TTTCATATTATGCTGAGAAGAAATAATTGAAGAGGGGAAAATTGGGGATT
GGGATTTGGTTCTCTTCTAATTGCTACAATAGACTGCTTTCCTGTTGATC
GACAAACTCTCATTTTCATGCAAGCAAATGTCTTGAACATGGCTTGTTAT
AAACAAAACTATTGCTGCCAAATTTACGTTCATGGTTTATTTGAGCTGCA
CCTCTGTTGCCAAAGTTTTAAGATGTACGCACACAAAACCTAATTATTTG
CATTTCATCTCNNANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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