CX298711

Overview
NameCX298711
Unique NameCX298711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298711 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.237e-65
Identity = 115/137 (83.94%), Postives = 126/137 (91.97%), Query Frame = 3
Query:   15 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVSN 425
            MKVI+KI E     +  FSFE+FPPKTE+GVENLFERMDRMVAH P+FCDITWGAGGSTADLTL+IANRMQN +CVETMMHLTCTNMPVEKIDHAL+TIKSNGIQNVLALRGDPPHGQDKFVQ++GGFACALDLV +
Sbjct:    1 MKVIEKILEAAGDGRTAFSFEYFPPKTEEGVENLFERMDRMVAHGPSFCDITWGAGGSTADLTLEIANRMQNMVCVETMMHLTCTNMPVEKIDHALETIKSNGIQNVLALRGDPPHGQDKFVQVEGGFACALDLVQH 137          
BLAST of CX298711 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.473e-64
Identity = 115/137 (83.94%), Postives = 125/137 (91.24%), Query Frame = 3
Query:   15 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVSN 425
            MKVI+KIQE  A  + VFSFE+FPPKTE+G++NLFERMDRMVAH P FCDITWGAGGSTADLTL+IANRMQN +CVETMMHLTCTNMPVEKID AL TIKSNGIQNVLALRGDPPHGQDKFVQ+ GGFACALDLV +
Sbjct:    1 MKVIEKIQEAAADGRTVFSFEYFPPKTEEGLDNLFERMDRMVAHGPNFCDITWGAGGSTADLTLEIANRMQNMVCVETMMHLTCTNMPVEKIDDALTTIKSNGIQNVLALRGDPPHGQDKFVQVAGGFACALDLVQH 137          
BLAST of CX298711 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 2.473e-64
Identity = 114/137 (83.21%), Postives = 125/137 (91.24%), Query Frame = 3
Query:   15 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVSN 425
            MKVIDKIQ      K  FSFEFFPPKTEDGV+NLFERMDRMVA+ P FCDITWGAGGSTADLTLDIA+RMQN +CVE+MMHLTCTNMPVEKIDHAL+TI+SNGIQNVLALRGDPPHGQDKFVQ++GGF CALDLV++
Sbjct:    1 MKVIDKIQSLADEGKTAFSFEFFPPKTEDGVDNLFERMDRMVAYGPTFCDITWGAGGSTADLTLDIASRMQNVVCVESMMHLTCTNMPVEKIDHALETIRSNGIQNVLALRGDPPHGQDKFVQVEGGFDCALDLVNH 137          
BLAST of CX298711 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 9.399e-64
Identity = 111/137 (81.02%), Postives = 126/137 (91.97%), Query Frame = 3
Query:   15 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVSN 425
            MKV+DKI+      +  FSFEFFPPKTEDGVENLFERMDR+V++ P FCDITWGAGGSTADLTL+IA+RMQN ICVETMMHLTCTNMP+EKIDHAL+TI+SNGIQNVLALRGDPPHGQDKFVQ++GGFACALDLV++
Sbjct:    1 MKVVDKIKSVTEQGQTAFSFEFFPPKTEDGVENLFERMDRLVSYGPTFCDITWGAGGSTADLTLEIASRMQNVICVETMMHLTCTNMPIEKIDHALETIRSNGIQNVLALRGDPPHGQDKFVQVEGGFACALDLVNH 137          
BLAST of CX298711 vs. ExPASy Swiss-Prot
Match: MTHR2_YEAST (Methylenetetrahydrofolate reductase 2 OS=Saccharomyces cerevisiae GN=MET13 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.370e-30
Identity = 67/138 (48.55%), Postives = 91/138 (65.94%), Query Frame = 3
Query:   15 MKVIDKI-QEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMV-AHNPAFCDITWGAGGST-ADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLV 419
            MK+ +K+ Q +  S K  +SFE+F PKT  GV+NL++RMDRM  A  P F DITW AGG   + L+ D+    Q+ + +ET MHLTCTNMP+  ID AL+    +G QN+LALRGDPP   + +  ++GGF  A DL+
Sbjct:    1 MKITEKLEQHRQTSGKPTYSFEYFVPKTTQGVQNLYDRMDRMYEASLPQFIDITWNAGGGRLSHLSTDLVATAQSVLGLETCMHLTCTNMPISMIDDALENAYHSGCQNILALRGDPPRDAENWTPVEGGFQYAKDLI 138          
BLAST of CX298711 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.978e-29
Identity = 67/136 (49.26%), Postives = 88/136 (64.71%), Query Frame = 3
Query:   15 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHN-PAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLV 419
            MK+ DK+      +KV +S+EFFPPKT  GV+NL+ R+DRM     P F D+TWGAGG++++LT  I N +Q    V+T MHLTCTNM  E ID AL+     G +N+LALRGDP    D + + + GF  A DLV
Sbjct:    1 MKISDKLLHPDWKEKVTYSYEFFPPKTSTGVQNLYNRIDRMKTWGRPMFVDVTWGAGGTSSELTPGIVNVIQTDFEVDTCMHLTCTNMSTEMIDAALKRAHETGCRNILALRGDPVKDTD-WTEGESGFRYASDLV 135          
BLAST of CX298711 vs. ExPASy Swiss-Prot
Match: MTHR1_YEAST (Methylenetetrahydrofolate reductase 1 OS=Saccharomyces cerevisiae GN=MET12 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 7.779e-26
Identity = 62/119 (52.10%), Postives = 76/119 (63.87%), Query Frame = 3
Query:   69 SFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD--KFVQIQGGFACALDLV 419
            S EFFPPKTE G  NL ERM RM A +P F  +TWGAGG+TA+ TL +A+  Q T+ +   MHLTCTN     ID AL    + GI+N+LALRGDPP G+D       +  F  A+DLV
Sbjct:   16 SLEFFPPKTELGTRNLMERMHRMTALDPLFITVTWGAGGTTAEKTLTLASLAQQTLNIPVCMHLTCTNTEKAIIDDALDRCYNAGIRNILALRGDPPIGEDWLDSQSNESPFKYAVDLV 134          
BLAST of CX298711 vs. ExPASy Swiss-Prot
Match: MTHR2_SCHPO (Methylenetetrahydrofolate reductase 2 OS=Schizosaccharomyces pombe GN=met11 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24
Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 3
Query:   15 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHN-PAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLV 419
            MK++D I +K+ +    +SFE+FPPKT  G+ENL  R+ RM  +  P F  +TWG  GSTA++++ +A  ++    +   +HLTCTN+    ID AL+T K  GI+N+LALRGDPP   D +      F  A+DLV
Sbjct:    1 MKIVDLI-DKIPNGNAFYSFEYFPPKTTVGLENLSSRITRMSRNMMPLFSSVTWGTAGSTAEVSIYLAKMLEQHHKIPACLHLTCTNVDKAIIDKALETAKEYGIRNILALRGDPPLNSDHWEGKVSEFEHAVDLV 135          
BLAST of CX298711 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.378e-20
Identity = 53/137 (38.69%), Postives = 79/137 (57.66%), Query Frame = 3
Query:   27 DKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTAD----LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVSN 425
            DK++ ++ S    FS EFFPP+T +G  NL  R DRM A  P F D+TW   G         ++ IA+   N   +ET++H+TC    +E+I   L   K  G++N++ALRGDP    D++ + +GGF  A+DLV +
Sbjct:   47 DKMRRRMESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLFIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCCQRLEEITGHLHKAKQLGLKNIMALRGDPI--GDQWEEEEGGFNYAVDLVKH 181          
BLAST of CX298711 vs. ExPASy Swiss-Prot
Match: METF_AQUAE (5,10-methylenetetrahydrofolate reductase OS=Aquifex aeolicus GN=metF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.378e-20
Identity = 55/135 (40.74%), Postives = 78/135 (57.78%), Query Frame = 3
Query:   15 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLV 419
            MK+ D +++ V S     SFEFFPPKTE+G   LFE + ++   NP F  +T+GAGGST D T +I  ++     +  M HLTC     E++   LQ  K+ GI+N+LALRGD P  +  +   +G    A +LV
Sbjct:    1 MKIGDILRKGVFS----ISFEFFPPKTEEGERQLFETIRKLEKLNPTFVSVTYGAGGSTRDRTRNIVQKIHEETNLTVMAHLTCIAHTREELIDILQDYKNIGIENILALRGDVPRDKPDWRPPKGACKYAKELV 131          
The following BLAST results are available for this feature:
BLAST of CX298711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
MTHR1_MAIZE2.237e-6583.94Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR_ORYSJ2.473e-6483.94Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR2_ARATH2.473e-6483.21Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR1_ARATH9.399e-6481.02Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR2_YEAST1.370e-3048.55Methylenetetrahydrofolate reductase 2 OS=Saccharom... [more]
MTHR1_SCHPO1.978e-2949.26Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]
MTHR1_YEAST7.779e-2652.10Methylenetetrahydrofolate reductase 1 OS=Saccharom... [more]
MTHR2_SCHPO1.467e-2443.38Methylenetetrahydrofolate reductase 2 OS=Schizosac... [more]
MTHR_MACFA6.378e-2038.69Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
METF_AQUAE6.378e-2040.745,10-methylenetetrahydrofolate reductase OS=Aquife... [more]

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Properties
Property NameValue
Genbank descriptionC06014F12SK RindPdig24 Citrus clementina cDNA clone C06014F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298711 ID=CX298711; Name=CX298711; organism=Citrus clementina; type=EST; length=640bp
TCTCCGAACCAAAAATGAAGGTAATAGACAAGATTCAAGAGAAAGTAGCC
TCCGACAAGGTCGTCTTCTCCTTCGAATTCTTCCCGCCGAAGACGGAAGA
TGGCGTGGAGAACTTGTTCGAGCGGATGGACCGCATGGTGGCCCACAACC
CGGCATTCTGCGACATCACGTGGGGGGCGGGTGGCTCCACGGCCGATCTG
ACTCTCGACATCGCGAACAGGATGCAGAACACGATATGCGTCGAGACGAT
GATGCATTTGACGTGCACGAACATGCCCGTCGAGAAGATCGATCACGCTC
TTCAGACTATTAAGTCCAACGGCATCCAGAACGTTCTCGCTCTTCGCGGC
GATCCTCCTCACGGTCAGGATAAGTTCGTTCAGATCCAGGGTGGCTTCGC
CTGCGCTCTTGATCTCGTAAGTAATCGTAGCACTACTTGGTGGTAAACAC
GCTCATTCTGATTTGATTAGAACAGTGAAAATGAAAGAAAAAGTTATGAG
GGTTCAGAATGCCGTATTATGGTCGAATGCTAATTTAGTCCCTATAGTTT
AAACTAATTATTCGGTAAGTCTCTATATTTTTAAAAACTACTTAAAAATA
TGCCTGTTGTATATACGTTTTCGTTAAAATCTATTTTCAC
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