CX298835

Overview
NameCX298835
Unique NameCX298835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298835 vs. ExPASy Swiss-Prot
Match: PM14_ARATH (Pre-mRNA branch site p14-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.246e-48
Identity = 96/124 (77.42%), Postives = 100/124 (80.65%), Query Frame = 3
Query:   54 MATIPLRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTXXXXXXXXXXXXXELAKMQEKYGVSTKDK 425
            M TI LRK N RLPPEVNRVLYVRNLPFNI+SEEMYDIFGKYGAIRQIRIG  K T+GTAFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ               E+ K+QEKYGVSTKDK
Sbjct:    1 MTTISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVSTKDK 124          
BLAST of CX298835 vs. ExPASy Swiss-Prot
Match: PM14_MOUSE (Pre-mRNA branch site protein p14 OS=Mus musculus GN=Sf3b14 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.366e-37
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 3
Query:   54 MATIPLRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTXXXXXXXXXXXXXELAKMQEKYGVST 416
            MA    ++ N RLPPEVNR+LY+RNLP+ I++EEMYDIFGKYG IRQIR+G++ +TRGTA+VVYEDI+DAK A DHLSGFNV NRYL+VLYY                +L  ++EKYG++T
Sbjct:    1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121          
BLAST of CX298835 vs. ExPASy Swiss-Prot
Match: PM14_HUMAN (Pre-mRNA branch site protein p14 OS=Homo sapiens GN=SF3B14 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.366e-37
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 3
Query:   54 MATIPLRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTXXXXXXXXXXXXXELAKMQEKYGVST 416
            MA    ++ N RLPPEVNR+LY+RNLP+ I++EEMYDIFGKYG IRQIR+G++ +TRGTA+VVYEDI+DAK A DHLSGFNV NRYL+VLYY                +L  ++EKYG++T
Sbjct:    1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121          
BLAST of CX298835 vs. ExPASy Swiss-Prot
Match: PM14_DROME (Pre-mRNA branch site p14-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.972e-36
Identity = 71/117 (60.68%), Postives = 89/117 (76.07%), Query Frame = 3
Query:   72 RKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTXXXXXXXXXXXXXELAKMQEKYGVSTKD 422
            ++ + RLPPEVNR+LYVRNLP+ I+S+EMYDIFGK+GAIRQIR+G++ +TRGTAFVVYEDI+DAK A DHLSGFNV NRYL+VLYYQ               EL  ++ KY + T +
Sbjct:    3 KRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTPE 119          
BLAST of CX298835 vs. ExPASy Swiss-Prot
Match: PM14_CAEEL (Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.737e-36
Identity = 68/119 (57.14%), Postives = 93/119 (78.15%), Query Frame = 3
Query:   54 MATIPLRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTXXXXXXXXXXXXXELAKMQEKYGV 410
            MA    +   A+LPPEVNR+LY++NLP+ I++EEMY+IFGK+GA+RQIR+G++ +TRGTAFVVYEDI+DAKTA +HLSG+NV+NRYL+VLYYQ T             +L  ++E+YG+
Sbjct:    1 MAMANRQNRGAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTKLEDIKERYGI 119          
BLAST of CX298835 vs. ExPASy Swiss-Prot
Match: PM14_SCHPO (Pre-mRNA branch site p14-like protein OS=Schizosaccharomyces pombe GN=SPBC29A3.07c PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.275e-23
Identity = 50/105 (47.62%), Postives = 74/105 (70.48%), Query Frame = 3
Query:   99 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ-QTXXXXXXXXXXXXXELAKMQEKYGV 410
            EVN +L+++NL F I++EEMYD+FG+YG +RQIR+G++  TRGTAFVVYE++ DA+ A + LSG+N  +RYL+V YY  +               L ++++KYGV
Sbjct:    9 EVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGYNFMDRYLVVHYYNPERAKVDGQDLAARYAALEQVKQKYGV 113          
The following BLAST results are available for this feature:
BLAST of CX298835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PM14_ARATH2.246e-4877.42Pre-mRNA branch site p14-like protein OS=Arabidops... [more]
PM14_MOUSE1.366e-3759.50Pre-mRNA branch site protein p14 OS=Mus musculus G... [more]
PM14_HUMAN1.366e-3759.50Pre-mRNA branch site protein p14 OS=Homo sapiens G... [more]
PM14_DROME1.972e-3660.68Pre-mRNA branch site p14-like protein OS=Drosophil... [more]
PM14_CAEEL5.737e-3657.14Pre-mRNA branch site p14-like protein OS=Caenorhab... [more]
PM14_SCHPO7.275e-2347.62Pre-mRNA branch site p14-like protein OS=Schizosac... [more]
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Properties
Property NameValue
Genbank descriptionC06016A12SK RindPdig24 Citrus clementina cDNA clone C06016A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298835 ID=CX298835; Name=CX298835; organism=Citrus clementina; type=EST; length=607bp
GATTCGGCCGAGGCTCTCTGCAATTTTCTGATCGACAAAGCGAAGCGAAG
GGAATGGCGACAATACCTCTGCGGAAGGGCAACGCTCGTCTGCCACCAGA
AGTAAACAGAGTTCTGTACGTCCGCAACCTGCCGTTCAACATCTCATCGG
AAGAGATGTACGACATCTTCGGCAAATACGGAGCGATACGGCAGATACGT
ATCGGCTCGAGTAAGGACACCCGTGGCACGGCTTTCGTCGTCTACGAGGA
CATCTACGACGCCAAAACGGCGGTGGATCACTTATCCGGTTTCAACGTTG
CCAATAGGTATCTGATTGTTTTGTATTACCAGCAGACTAAGATGAGCAAG
AAGTTTGATCAGAAGAAGAAGGACGATGAGCTCGCTAAGATGCAGGAAAA
GTACGGCGTTTCGACTAAAGACAAGTAATTCTTAATAGTTTAAGCTCTTT
TGTTGAATTTCTAGGGTTACGGATTTTCAATTTCTAGTGTTTTTTTTTAA
ATTTATAAATCAAAATATGAACGGAACCTCTGTAATGTGTATGATGGATA
TTGTTGTATGAAAATAGAGAGTGGTCTTTTGAGAGTGGTCAAAAAAAAAA
AAAAAAA
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