CX298856

Overview
NameCX298856
Unique NameCX298856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298856 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 78/120 (65.00%), Postives = 95/120 (79.17%), Query Frame = 2
Query:   68 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 427
            D  FLR  SF++LQ  R+R +KT+++SCPSCGRTLF+LQ+++  I+ +TSHLPGV IAIMGCIVNGPGEMADADFGYVG  PGKIDLYVGK  V++ I    A D L+ LI+ HGRW EP
Sbjct:  530 DILFLRQLSFSILQAARLRMSKTDFISCPSCGRTLFNLQDVTKRIQSRTSHLPGVKIAIMGCIVNGPGEMADADFGYVGSKPGKIDLYVGKECVEKDIDFADADDRLVNLIRAHGRWIEP 649          
BLAST of CX298856 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans GN=ispG PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 2
Query:   65 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 427
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLFDLQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L+QLIKD+G W +P
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFDLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVLKNVPSEIADEKLVQLIKDNGLWQDP 660          
BLAST of CX298856 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispG PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.441e-39
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 2
Query:   65 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 427
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLFDLQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L+QLIKD+  W +P
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFDLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVLKNVPSEIADEKLVQLIKDNELWQDP 660          
BLAST of CX298856 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBL (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.308e-38
Identity = 72/120 (60.00%), Postives = 92/120 (76.67%), Query Frame = 2
Query:   65 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 424
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLF+LQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L++LIK HG W +
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFNLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVMKNVPSEVADEKLVELIKKHGLWQD 659          
BLAST of CX298856 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.308e-38
Identity = 72/120 (60.00%), Postives = 92/120 (76.67%), Query Frame = 2
Query:   65 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 424
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLF+LQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L++LIK HG W +
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFNLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVMKNVPSEVADEKLVELIKKHGLWQD 659          
BLAST of CX298856 vs. ExPASy Swiss-Prot
Match: ISPG_CHLMU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum GN=ispG PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 73/121 (60.33%), Postives = 87/121 (71.90%), Query Frame = 2
Query:   68 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 427
            D    R   F++LQ   +R+T  EY+SCP CGRTLFDL E+S  I+E+T HLPG + IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  + ME A + LIQL+K+HG W EP
Sbjct:  480 DLKLARTLGFSILQSANIRSTTVEYISCPGCGRTLFDLPEVSQRIKERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSYVPMENAEEELIQLLKEHGVWKEP 600          
BLAST of CX298856 vs. ExPASy Swiss-Prot
Match: ISPG_AKKM8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ispG PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.206e-37
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 2
Query:   95 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 427
            FN+LQ    R T+ +YVSCPSCGRTL+++QE +A IR+ T HL GV IA+MGCIVNGPGEMADADFGYVGGAP KI+LYV  T VK  I  E+A + L+ LIK++GRW +P
Sbjct:  474 FNILQATGTRLTRADYVSCPSCGRTLYNIQEATARIRKATEHLKGVKIAVMGCIVNGPGEMADADFGYVGGAPNKINLYVKHTPVKFNIPQEEAVERLVDLIKEYGRWVDP 584          
BLAST of CX298856 vs. ExPASy Swiss-Prot
Match: ISPG_CHLAB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila abortus GN=ispG PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.561e-36
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 2
Query:   53 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 427
            + P      +R+ +F  LQ   +R  KTEY+SCP CGRTLFDL E++  I E+T HL G+ IA+MGCIVNGPGEMADADFG+VG   G +DLYV  T VK  I MEQA D L+ L+K+HG W +P
Sbjct:  481 DLPNIPLSTVREIAFGTLQSAGVRLVKTEYISCPGCGRTLFDLPEVTKRIHERTQHLVGLKIAVMGCIVNGPGEMADADFGFVGSKTGMVDLYVKHTCVKAHIPMEQAEDELVLLLKEHGVWKDP 605          
BLAST of CX298856 vs. ExPASy Swiss-Prot
Match: ISPG_CHLCV (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila caviae GN=ispG PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.650e-36
Identity = 69/125 (55.20%), Postives = 89/125 (71.20%), Query Frame = 2
Query:   53 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 427
            + P      +R+ +F+ LQ   +R  KTEY+SCP CGRTLFDL E++  IREKT HL G+ IA+MGCIVNGPGEMAD+DFG+VG   G IDLYV  T VK  I ME A + L++L+++HG W +P
Sbjct:  481 DLPNVSLPTVREIAFSTLQSAGVRLVKTEYISCPGCGRTLFDLPEVTTRIREKTKHLVGLKIAVMGCIVNGPGEMADSDFGFVGSKTGMIDLYVKHTCVKAHIPMEDAEEELVRLLQEHGVWKDP 605          
BLAST of CX298856 vs. ExPASy Swiss-Prot
Match: ISPG_CHLPN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia pneumoniae GN=ispG PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.932e-36
Identity = 69/112 (61.61%), Postives = 85/112 (75.89%), Query Frame = 2
Query:   92 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 427
            +F  LQ   +R  KTEY+SCP CGRTLFDL+E++  IR++T HLPG+ IAIMGCIVNGPGEMADADFG+VG   G IDLYV  T VK  I ME A + LI+L+++HG W +P
Sbjct:  495 AFGTLQNAGVRLVKTEYISCPMCGRTLFDLEEVTTRIRKRTQHLPGLKIAIMGCIVNGPGEMADADFGFVGSKTGMIDLYVKHTCVKAHIPMEDAEEELIRLLQEHGVWKDP 606          
The following BLAST results are available for this feature:
BLAST of CX298856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ISPG_PARUW5.672e-4265.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIN4.065e-4061.984-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIC3.441e-3961.164-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBL1.308e-3860.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBJ1.308e-3860.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLMU2.466e-3760.334-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_AKKM84.206e-3763.964-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLAB3.561e-3656.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLCV4.650e-3655.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLPN7.932e-3661.614-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06016C09SK RindPdig24 Citrus clementina cDNA clone C06016C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298856 ID=CX298856; Name=CX298856; organism=Citrus clementina; type=EST; length=722bp
GATTCGGCCGAGGGCCCTTTTAGTCGATGGACTTGGAGATGGTTTGCTGT
TAGAAGCCCCAGGACAAGATTTTGATTTTCTGAGGGACACATCTTTCAAC
TTACTACAAGGTTGCAGAATGAGGAATACAAAGACGGAGTATGTCTCATG
TCCATCATGTGGTAGAACTTTGTTTGACCTTCAAGAAATAAGTGCAGAGA
TACGAGAGAAAACATCGCACTTGCCCGGTGTTTCGATTGCTATCATGGGT
TGCATTGTCAATGGACCTGGAGAGATGGCTGATGCAGACTTTGGGTATGT
TGGTGGGGCTCCTGGAAAGATTGACCTGTATGTCGGGAAGACTGTGGTGA
AGCGTGGTATTGCAATGGAGCAGGCAACCGATGCCTTGATCCAACTAATA
AAGGATCACGGGCGCTGGGCGGAGCCTCCCGCAGAAGAGTAGGATATGGT
AATTTCCATCAACAGATATACAATAAAGACTCAGTTGAAGGGAGACCACC
ATACCCCAGCTGTTGTATATTAAATTCCACATGGCACAAAAGACTACACA
GTAATAGCAGATCATATAAATTTTTCCGTCAGATGGAGCATCTATAGTTC
ACCAAGGAAAGCGTTATATGTTCCTCAAGTGTATGCAGATAAAGCTGTAA
CACTCCCATTAGTAACAAGTCCAATGTTTCCTACATTTTGTTTTCTTACA
CAACCAAATATAATGTATTTCT
back to top