CX298858
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22 Identity = 60/163 (36.81%), Postives = 90/163 (55.21%), Query Frame = 3 Query: 18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSW 506 RV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + S++K Q +E +++P TVY G ++S +T + + F G I ++RV DKG+ FVR+S+H A+ AI N + G +KC W Sbjct: 136 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTK-------------QLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYW 283
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22 Identity = 59/163 (36.20%), Postives = 92/163 (56.44%), Query Frame = 3 Query: 18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSW 506 RV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + Q +++K Q + + +++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH A+ AI N + G +KC W Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTK-------------QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 291
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22 Identity = 59/163 (36.20%), Postives = 92/163 (56.44%), Query Frame = 3 Query: 18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSW 506 RV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + Q +++K Q + + +++P+ TVY G ++S +T + + F G I ++RV +KG+ FVR+STH A+ AI N + G +KC W Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTK-------------QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 274
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22 Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 3 Query: 18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSW 506 RV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWA + + S++K +S D E N+ +P N TVY G ++S +T + + F G I ++RV DKG+ FVR+++H A+ AI N + G +KC W Sbjct: 136 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ-------LSYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYW 283
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13 Identity = 59/163 (36.20%), Postives = 83/163 (50.92%), Query Frame = 3 Query: 18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 494 +VM D +GRSRGFGFV++ N E+AQ A++++NGK + R I A K E+QS EL + QE+ N Q +YV NL + L + F L GTI +V + KGFGFV +S+ EA+ A+ N RI+ KP+ Sbjct: 221 KVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI----ERQS-------ELKRKFEQIKQERI------NRYQGVNLYVKNLDDGIDDDRLRKEF--LPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13 Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3 Query: 18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 494 +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K E+Q+ EL + Q++ Q +YV NL + L + F GTI +V R KGFGFV +S+ EA+ A+ N RI+ KP+ Sbjct: 221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQT-------ELKRTFEQMKQDRI------TRYQVVNLYVKNLDDGIDDERLRKAFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13 Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3 Query: 18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 494 +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K E+Q+ EL + Q++ Q +YV NL + L + F GTI +V R KGFGFV +S+ EA+ A+ N RI+ KP+ Sbjct: 221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQT-------ELKRKFEQMKQDRI------TRYQGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13 Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3 Query: 18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 494 +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K E+Q+ EL + Q++ Q +YV NL + L + F GTI +V R KGFGFV +S+ EA+ A+ N RI+ KP+ Sbjct: 221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQT-------ELKRKFEQMKQDRI------TRYQGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13 Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3 Query: 18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 494 +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K E+Q+ EL + Q++ Q +YV NL + L + F GTI +V R KGFGFV +S+ EA+ A+ N RI+ KP+ Sbjct: 221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQT-------ELKRKFEQMKQDRI------TRYQGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13 Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3 Query: 18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 494 +VM D+ +G+S+GFGFVSF EDAQ A++++NGK L +QI A K E+Q+ EL + Q++ Q +YV NL + L + F GTI +V R KGFGFV +S+ EA+ A+ N RI+ KP+ Sbjct: 221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQT-------ELKRKFEQMKQDRI------TRYQGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363 The following BLAST results are available for this feature:
BLAST of CX298858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298858 ID=CX298858; Name=CX298858; organism=Citrus clementina; type=EST; length=723bpback to top |