CX298858

Overview
NameCX298858
Unique NameCX298858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 60/163 (36.81%), Postives = 90/163 (55.21%), Query Frame = 3
Query:   18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSW 506
            RV+ D  TG+S+G+GFVSF N+ DA++AI  + G+WLG RQIR NWA +   +      S++K             Q   +E   +++P   TVY G ++S +T   + + F     G I ++RV  DKG+ FVR+S+H  A+ AI   N   + G  +KC W
Sbjct:  136 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTK-------------QLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYW 283          
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22
Identity = 59/163 (36.20%), Postives = 92/163 (56.44%), Query Frame = 3
Query:   18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSW 506
            RV+ D  TG+S+G+GFVSF N+ DA++AI  + G+WLG RQIR NWA +   +    Q +++K             Q +  +   +++P+  TVY G ++S +T   + + F     G I ++RV  +KG+ FVR+STH  A+ AI   N   + G  +KC W
Sbjct:  144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTK-------------QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 291          
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22
Identity = 59/163 (36.20%), Postives = 92/163 (56.44%), Query Frame = 3
Query:   18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSW 506
            RV+ D  TG+S+G+GFVSF N+ DA++AI  + G+WLG RQIR NWA +   +    Q +++K             Q +  +   +++P+  TVY G ++S +T   + + F     G I ++RV  +KG+ FVR+STH  A+ AI   N   + G  +KC W
Sbjct:  127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTK-------------QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 274          
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 3
Query:   18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSW 506
            RV+ D  TG+S+G+GFVSF N+ DA++AI  + G+WLG RQIR NWA +   +      S++K        +S D  E  N+ +P N     TVY G ++S +T   + + F     G I ++RV  DKG+ FVR+++H  A+ AI   N   + G  +KC W
Sbjct:  136 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ-------LSYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPF--GQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYW 283          
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 59/163 (36.20%), Postives = 83/163 (50.92%), Query Frame = 3
Query:   18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 494
            +VM D  +GRSRGFGFV++ N E+AQ A++++NGK +  R I    A K      E+QS       EL     +  QE+       N  Q   +YV NL   +    L + F  L  GTI   +V  +    KGFGFV +S+  EA+ A+   N RI+  KP+
Sbjct:  221 KVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI----ERQS-------ELKRKFEQIKQERI------NRYQGVNLYVKNLDDGIDDDRLRKEF--LPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363          
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3
Query:   18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 494
            +VM D+ +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K      E+Q+       EL     +  Q++          Q   +YV NL   +    L + F     GTI   +V     R KGFGFV +S+  EA+ A+   N RI+  KP+
Sbjct:  221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQT-------ELKRTFEQMKQDRI------TRYQVVNLYVKNLDDGIDDERLRKAFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3
Query:   18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 494
            +VM D+ +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K      E+Q+       EL     +  Q++          Q   +YV NL   +    L + F     GTI   +V     R KGFGFV +S+  EA+ A+   N RI+  KP+
Sbjct:  221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQT-------ELKRKFEQMKQDRI------TRYQGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3
Query:   18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 494
            +VM D+ +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K      E+Q+       EL     +  Q++          Q   +YV NL   +    L + F     GTI   +V     R KGFGFV +S+  EA+ A+   N RI+  KP+
Sbjct:  221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQT-------ELKRKFEQMKQDRI------TRYQGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3
Query:   18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 494
            +VM D+ +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K      E+Q+       EL     +  Q++          Q   +YV NL   +    L + F     GTI   +V     R KGFGFV +S+  EA+ A+   N RI+  KP+
Sbjct:  221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQT-------ELKRKFEQMKQDRI------TRYQGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of CX298858 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3
Query:   18 RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 494
            +VM D+ +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K      E+Q+       EL     +  Q++          Q   +YV NL   +    L + F     GTI   +V     R KGFGFV +S+  EA+ A+   N RI+  KP+
Sbjct:  221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQT-------ELKRKFEQMKQDRI------TRYQGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
The following BLAST results are available for this feature:
BLAST of CX298858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TIA1_MOUSE1.006e-2236.81Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIAR_MOUSE1.314e-2236.20Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
TIAR_HUMAN1.314e-2236.20Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
TIA1_HUMAN2.241e-2238.04Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
EPABA_XENLA1.456e-1336.20Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABP3_HUMAN1.901e-1334.97Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PABP1_RAT1.901e-1334.97Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_PONAB1.901e-1334.97Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_MOUSE1.901e-1334.97Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP1_HUMAN1.901e-1334.97Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06016C11SK RindPdig24 Citrus clementina cDNA clone C06016C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298858 ID=CX298858; Name=CX298858; organism=Citrus clementina; type=EST; length=723bp
GAGGCTTGTTCGGATGAAGGGTTATGTGGGACCAAAAGACTGGGCGTTCA
AGGGGTTTTGGGTTTGTTTCTTTTCGGAATCAGGAGGATGCCCAAAGTGC
AATAAATGACTTAAATGGGAAGTGGCTTGGTAATAGACAGATTCGGTGCA
ACTGGGCTGCAAAAGGTGCTACCTCTGGTGATGAAAAGCAAAGTTCAGAT
TCCAAAAGTGTTGTAGAGCTTACAAATGGAATATCTGAAGATGGTCAAGA
GAAGAGCAATGAGGATGCTCCGGAGAACAATCCTCAGTATACAACTGTTT
ATGTTGGCAATCTTTCTTCAGAGGTTACCTCAGTTGATCTCCACCGACAT
TTTCATGCTCTTTGTGTTGGAACAATTGAAGATGTTCGGGTACAGCGAGA
CAAGGGTTTCGGGTTTGTGAGATACTCTACACATCCTGAAGCTTCCCTGG
CTATTCAGATGGGTAATGCTCGGATTCTTTGCGGCAAACCAATTAAGTGT
TCGTGGGGAAGTAAACCAACTCCCCCAGGAACAAGCTCTACTCCTCTTCC
TCCACCTCCTGCACCACATTTGCCAGGTTTCTCAGCCACAGACCTCGCTG
CCTATGAGCGACAGATAGCATTGAGCAAAATAGCTGGGGCACAGGCCCTA
ATGCATCCGCAGGCACAGCATGCCCTTAAGCTGGGAATGGGTGCTGCTGG
GGCTAGTCAAGCATCTATGACAG
back to top