CX298871

Overview
NameCX298871
Unique NameCX298871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298871 vs. ExPASy Swiss-Prot
Match: YSL3_ARATH (Metal-nicotianamine transporter YSL3 OS=Arabidopsis thaliana GN=YSL3 PE=2 SV=1)

HSP 1 Score: 424.861 bits (1091), Expect = 2.266e-118
Identity = 201/233 (86.27%), Postives = 220/233 (94.42%), Query Frame = 3
Query:    3 ACVGYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWH 701
            A VGY  FS++SII IP+MFP+LKWY++VVAY+LAPSL F NAYGAGLTDMNMAYNYGKVALF+LAA++GK+NGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGN +GEYKAPYA+VYRNMAILGVEGFSALPQHCLQLCYGFFAFA+AANL+RD  P KI  W+PLPMAMAVPFLVG YFAIDMC+GSL+VFAW+
Sbjct:  391 AAVGYAAFSVVSIIAIPIMFPELKWYFIVVAYMLAPSLGFSNAYGAGLTDMNMAYNYGKVALFILAAMAGKQNGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNQEGEYKAPYALVYRNMAILGVEGFSALPQHCLQLCYGFFAFAVAANLVRDRLPDKIGNWVPLPMAMAVPFLVGGYFAIDMCVGSLIVFAWN 623          
BLAST of CX298871 vs. ExPASy Swiss-Prot
Match: YSL2_ARATH (Metal-nicotianamine transporter YSL2 OS=Arabidopsis thaliana GN=YSL2 PE=2 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 1.680e-113
Identity = 193/235 (82.13%), Postives = 217/235 (92.34%), Query Frame = 3
Query:    3 ACVGYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKL 707
            ACVGY  FS++SII IPLMFP+LKWY+V+VAY+LAPSLSFCNAYGAGLTDMNMAYNYGK ALFV+AAL+GK +GVVAG+V CGLIKSIVS+S+DLMHDFKTGHLT TSPRSMLV+QAIGTAIGCVVAPLTFFLFYKAFDVGN +GEYKAPYA++YRNMAI+GV+G SALP+HCL+LCYGFFAFA+AANL RDL P K  KWIPLPMAMAVPFLVG  FAIDMC+GSLVV+ W K+
Sbjct:  383 ACVGYLFFSLVSIIAIPLMFPQLKWYFVLVAYLLAPSLSFCNAYGAGLTDMNMAYNYGKAALFVMAALAGKNDGVVAGMVACGLIKSIVSVSADLMHDFKTGHLTQTSPRSMLVAQAIGTAIGCVVAPLTFFLFYKAFDVGNQNGEYKAPYAMIYRNMAIIGVQGPSALPKHCLELCYGFFAFAVAANLARDLLPDKPGKWIPLPMAMAVPFLVGGSFAIDMCIGSLVVYVWKKV 617          
BLAST of CX298871 vs. ExPASy Swiss-Prot
Match: YSL9_ORYSJ (Probable metal-nicotianamine transporter YSL9 OS=Oryza sativa subsp. japonica GN=YSL9 PE=2 SV=2)

HSP 1 Score: 394.045 bits (1011), Expect = 4.283e-109
Identity = 177/230 (76.96%), Postives = 210/230 (91.30%), Query Frame = 3
Query:   12 GYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWH 701
            GY   + I++I IP+MF ++KWYYVV+AY+LAP+L FCNAYGAGLTD+NMAYNYGK+ALF+LAA +GK++GVVAGLVGCGL+KS+VSIS+DLMHDFKTGHLTLTSPRSM+++QAIGT +GCV++PLTFFLFY AFD+GNP+G +KAPYA+VYRNMAILGVEGFSALPQHCLQLCYGFF FA+AANL RDL P K  +W+PLPMAM VPFLVGA FAIDMC+GSL+VF WH
Sbjct:  406 GYLGLTFIAVIAIPMMFHEMKWYYVVIAYLLAPALGFCNAYGAGLTDINMAYNYGKIALFILAAWAGKDSGVVAGLVGCGLVKSLVSISADLMHDFKTGHLTLTSPRSMIIAQAIGTVMGCVISPLTFFLFYSAFDIGNPEGYWKAPYALVYRNMAILGVEGFSALPQHCLQLCYGFFGFAVAANLTRDLCPPKYGRWVPLPMAMGVPFLVGASFAIDMCIGSLIVFTWH 635          
BLAST of CX298871 vs. ExPASy Swiss-Prot
Match: YSL16_ORYSJ (Probable metal-nicotianamine transporter YSL16 OS=Oryza sativa subsp. japonica GN=YSL16 PE=2 SV=2)

HSP 1 Score: 381.333 bits (978), Expect = 2.873e-105
Identity = 172/234 (73.50%), Postives = 209/234 (89.32%), Query Frame = 3
Query:    3 ACVGYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHK 704
            A  GYT+ S+I++++IP+MF ++KWYYV++AY+LAP+L FCNAYG GLTDMNM YNYGK+ALF+ AA +GK++GVVAGLVGCGL+K +V IS+DLMHDFKTGHLTLTSPRSMLV Q +GT +GCVVAPLTFFLFYKAFDVG+P+G +KAPYA++YRNMAI+GVEGFSALP+HCLQLC GFFAFA+ ANL RD  P++  +++PLPMAMAVPFLVGA FAIDMC GSLVVF WH+
Sbjct:  394 AYTGYTLLSVIAVVLIPVMFRQVKWYYVIIAYLLAPALGFCNAYGTGLTDMNMGYNYGKIALFIFAAWAGKDDGVVAGLVGCGLVKQLVLISADLMHDFKTGHLTLTSPRSMLVGQVVGTLMGCVVAPLTFFLFYKAFDVGDPNGYWKAPYALIYRNMAIIGVEGFSALPRHCLQLCAGFFAFAVLANLARDFLPRRYGRYMPLPMAMAVPFLVGASFAIDMCAGSLVVFLWHR 627          
BLAST of CX298871 vs. ExPASy Swiss-Prot
Match: YSL1_ARATH (Metal-nicotianamine transporter YSL1 OS=Arabidopsis thaliana GN=YSL1 PE=2 SV=2)

HSP 1 Score: 377.867 bits (969), Expect = 3.176e-104
Identity = 167/235 (71.06%), Postives = 207/235 (88.09%), Query Frame = 3
Query:    3 ACVGYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKL 707
            A  GY  F+ +S +V+PL+FP+LKWYYV+VAYI APSL+FCNAYGAGLTD+NMAYNYGK+ LFV+AA++G+ENGVVAGL GCGLIKS+VS+S  LM DFKT H T+TSP++M  SQ IGT +GC+V PL+FFLFYKAFD+GNP+GE+KAPYA++YRNMAILGV+GFSALP HCLQ+CYGFF FA+  N++RDL+P KI +++PLP AMAVPFLVGAYFAIDMC+G+L+VF W K+
Sbjct:  393 AVSGYLTFAAVSTVVVPLIFPQLKWYYVIVAYIFAPSLAFCNAYGAGLTDINMAYNYGKIGLFVIAAVTGRENGVVAGLAGCGLIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNPNGEFKAPYALIYRNMAILGVQGFSALPLHCLQMCYGFFGFAVLVNVVRDLTPAKIGRFMPLPTAMAVPFLVGAYFAIDMCVGTLIVFVWEKM 627          
BLAST of CX298871 vs. ExPASy Swiss-Prot
Match: YSL2_ORYSJ (Metal-nicotianamine transporter YSL2 OS=Oryza sativa subsp. japonica GN=YSL2 PE=2 SV=2)

HSP 1 Score: 373.629 bits (958), Expect = 5.990e-103
Identity = 167/235 (71.06%), Postives = 206/235 (87.66%), Query Frame = 3
Query:    3 ACVGYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKL 707
            A  GY + SI+++I IP+MF ++KWYYVVVA++LAP L F NAYG GLTDMNM+YNYGK+ALF+ AA  G++NGV+AGLVGCG++K +V +S+DLMHDFKTGHLTLTSPRSMLV QAIGTA+GC++APLTF LFYKAFD+GNPDG +KAPYA+++RNMAILGVEGFSALP+HCL+L  GFFAF++  NL+RD  P+K   ++PLP AMAVPFLVGA FAIDMC+GSL+VFAWHK+
Sbjct:  393 AYAGYALLSIVAVIAIPIMFQQVKWYYVVVAFVLAPVLGFSNAYGTGLTDMNMSYNYGKIALFIFAAWGGRDNGVIAGLVGCGIVKQLVQVSADLMHDFKTGHLTLTSPRSMLVGQAIGTAMGCIIAPLTFLLFYKAFDIGNPDGYWKAPYALIFRNMAILGVEGFSALPKHCLELSAGFFAFSVLINLMRDFLPRKYRDYVPLPTAMAVPFLVGANFAIDMCVGSLIVFAWHKI 627          
BLAST of CX298871 vs. ExPASy Swiss-Prot
Match: YSL15_ORYSJ (Iron-phytosiderophore transporter YSL15 OS=Oryza sativa subsp. japonica GN=YSL15 PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 8.670e-94
Identity = 158/232 (68.10%), Postives = 193/232 (83.19%), Query Frame = 3
Query:   12 GYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKL 707
            GY + SII++I IP+MF ++KWYYV++AY L P L F N+YGAGLTD+NM YNYGK+ALFV AA +GK+NGV+AGLV   L+K +V +S+DLMHD KTGHLTLTSPRSMLV + IGT IGC +APLTF LFY+AFD+GNPDG +KAPYA++YRNMAILG+EG SALP+HCL L  GFFAFA+  N+ RD  P +  K +PLP AMAVPFLVGA FAIDMC+GSLV+FAW+K+
Sbjct:  394 GYFLLSIIAVITIPIMFRQVKWYYVIIAYALGPVLGFANSYGAGLTDINMGYNYGKIALFVFAAWAGKDNGVIAGLVVGTLVKQLVLVSADLMHDLKTGHLTLTSPRSMLVGELIGTGIGCFIAPLTFMLFYRAFDIGNPDGYWKAPYALIYRNMAILGIEGISALPKHCLSLSVGFFAFAVLTNVARDALPARYKKLVPLPTAMAVPFLVGASFAIDMCVGSLVLFAWNKM 625          
BLAST of CX298871 vs. ExPASy Swiss-Prot
Match: YS1_MAIZE (Iron-phytosiderophore transporter yellow stripe 1 OS=Zea mays GN=YS1 PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.132e-93
Identity = 156/235 (66.38%), Postives = 194/235 (82.55%), Query Frame = 3
Query:    3 ACVGYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKL 707
            A  GY   +++S ++IP MF ++KWYYV+VAY+LAP L F N+YG GLTD+NMAYNYGK+ALF+ AA +G++NGV+AGL G  L+K +V  S+DLMHDFKTGHLT+TSPRS+LV+Q IGTA+GCVVAPLTF LFY AFD+GNP G +KAPY ++YRNMAILGVEGFS LP+HCL L  GFFAFA   ++ RD+ P+K A+++PLPMAMAVPFLVG  FAIDMC+GSL VF W K+
Sbjct:  401 AYAGYAALTVVSAVIIPHMFRQVKWYYVIVAYVLAPLLGFANSYGTGLTDINMAYNYGKIALFIFAAWAGRDNGVIAGLAGGTLVKQLVMASADLMHDFKTGHLTMTSPRSLLVAQFIGTAMGCVVAPLTFLLFYNAFDIGNPTGYWKAPYGLIYRNMAILGVEGFSVLPRHCLALSAGFFAFAFVFSVARDVLPRKYARFVPLPMAMAVPFLVGGSFAIDMCVGSLAVFVWEKV 635          
BLAST of CX298871 vs. ExPASy Swiss-Prot
Match: YSL6_ORYSJ (Probable metal-nicotianamine transporter YSL6 OS=Oryza sativa subsp. japonica GN=YSL6 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.701e-87
Identity = 141/232 (60.78%), Postives = 190/232 (81.90%), Query Frame = 3
Query:   12 GYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKL 707
            GY   + IS   +P++FP++KWY V+ AY++AP L+FCN+YG GLTD N+A  YGK+ LF+ A+L G+  GV+AGL  CG++ SIVS ++DLM DF+TG+LTL+SPRSM VSQ IGT +GC++APLTF+L++ AFD+GNPDG +KAPYA++YR M+ILGVEGFSALPQHCL +C  FF  AI  NLLRD++PK ++K+IPLPMAMAVPF +GAYFAIDM +G++++F W ++
Sbjct:  398 GYVGLAAISTATVPMIFPQVKWYLVLCAYVVAPLLAFCNSYGCGLTDWNLASTYGKIGLFIFASLVGRSGGVIAGLAACGVMMSIVSTAADLMQDFRTGYLTLSSPRSMFVSQLIGTTLGCIIAPLTFWLYWTAFDIGNPDGMFKAPYAVIYREMSILGVEGFSALPQHCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYFAIDMFVGTVILFVWERV 629          
BLAST of CX298871 vs. ExPASy Swiss-Prot
Match: YSL6_ARATH (Probable metal-nicotianamine transporter YSL6 OS=Arabidopsis thaliana GN=YSL6 PE=2 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 1.341e-86
Identity = 138/235 (58.72%), Postives = 193/235 (82.13%), Query Frame = 3
Query:    3 ACVGYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKL 707
            A  GY   + IS   IP++FP LKWY+V+ +Y +AP+L+FCN+YG GLTD ++A  YGK+ LF++A++ G + GV+AGL  CG++ SIVS ++DLM DFKTG+LTL+S +SM VSQ +GTA+GCV+APLTF+LF+ AFD+G+P+G YKAPYA+++R MAILG+EGF+ LP+HCL LCYGFF  A+  NLLRD++P KI+++IP+PMAMAVPF +GAYFAIDM +G++++F W ++
Sbjct:  393 AIAGYVGLAAISTATIPIIFPPLKWYFVLCSYFIAPALAFCNSYGTGLTDWSLASTYGKIGLFIIASVVGSDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLVGTAMGCVIAPLTFWLFWTAFDIGDPNGPYKAPYAVIFREMAILGIEGFAELPKHCLALCYGFFIAALIVNLLRDITPPKISQFIPIPMAMAVPFYIGAYFAIDMFVGTVILFVWERI 627          
The following BLAST results are available for this feature:
BLAST of CX298871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
YSL3_ARATH2.266e-11886.27Metal-nicotianamine transporter YSL3 OS=Arabidopsi... [more]
YSL2_ARATH1.680e-11382.13Metal-nicotianamine transporter YSL2 OS=Arabidopsi... [more]
YSL9_ORYSJ4.283e-10976.96Probable metal-nicotianamine transporter YSL9 OS=O... [more]
YSL16_ORYSJ2.873e-10573.50Probable metal-nicotianamine transporter YSL16 OS=... [more]
YSL1_ARATH3.176e-10471.06Metal-nicotianamine transporter YSL1 OS=Arabidopsi... [more]
YSL2_ORYSJ5.990e-10371.06Metal-nicotianamine transporter YSL2 OS=Oryza sati... [more]
YSL15_ORYSJ8.670e-9468.10Iron-phytosiderophore transporter YSL15 OS=Oryza s... [more]
YS1_MAIZE1.132e-9366.38Iron-phytosiderophore transporter yellow stripe 1 ... [more]
YSL6_ORYSJ2.701e-8760.78Probable metal-nicotianamine transporter YSL6 OS=O... [more]
YSL6_ARATH1.341e-8658.72Probable metal-nicotianamine transporter YSL6 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC06016D12SK RindPdig24 Citrus clementina cDNA clone C06016D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298871 ID=CX298871; Name=CX298871; organism=Citrus clementina; type=EST; length=739bp
CGGCGTGTGTAGGGTACACTGTCTTCTCCATTATTTCCATCATTGTGATC
CCTCTCATGTTCCCCAAGCTGAAGTGGTACTATGTTGTTGTTGCTTACAT
TCTAGCGCCCTCTCTTAGCTTTTGTAATGCTTATGGTGCTGGTCTAACTG
ACATGAACATGGCCTATAACTATGGAAAAGTAGCCCTCTTTGTTCTTGCT
GCCTTGTCCGGGAAAGAAAATGGCGTGGTTGCTGGACTTGTGGGTTGTGG
TTTGATCAAATCCATCGTTTCCATCTCTTCTGATTTGATGCATGATTTTA
AGACCGGTCATCTCACTCTCACTTCACCCAGGTCGATGCTTGTGAGTCAG
GCCATTGGGACTGCCATAGGTTGTGTTGTAGCCCCTCTTACATTCTTTCT
CTTCTACAAGGCTTTTGATGTTGGTAACCCAGATGGTGAATACAAAGCTC
CTTATGCTATCGTCTACCGAAACATGGCAATTCTTGGTGTTGAGGGCTTC
TCTGCCCTGCCTCAGCATTGTTTACAGCTCTGTTATGGGTTTTTTGCCTT
TGCCATTGCGGCAAACTTACTAAGAGATCTTTCTCCTAAGAAAATAGCAA
AATGGATTCCCCTTCCAATGGCTATGGCTGTTCCATTCCTAGTTGGTGCC
TATTTTGCAATTGACATGTGTCTCGGAAGCTTGGTTGTGTTTGCATGGCA
CAAGTTGATAGCAAGATGCGGATTTATGATTCTGCATTG
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