CX299033

Overview
NameCX299033
Unique NameCX299033
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299033 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.162e-22
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 2
Query:    2 VALTYFQLAPEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLLFVRHIYRSIKCE 271
            VALTYFQL+ EDH+WWW SF+ GGST  FI           S M G +Q +F+F YM  +C+ FF++LGTVGF +SL+FV+ IYR++K +
Sbjct:  498 VALTYFQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRNLKSD 587          
BLAST of CX299033 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.855e-20
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:    2 VALTYFQLAPEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLLFVRHIYRSIKCE 271
            +ALTYFQL+ ED+ WWWRS L  GSTG FI          RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL F+R+IY ++K +
Sbjct:  500 IALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 589          
BLAST of CX299033 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.855e-20
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:    2 VALTYFQLAPEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLLFVRHIYRSIKCE 271
            +ALTYFQL+ ED+ WWWRS L  GSTG FI          RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL F+R+IY ++K +
Sbjct:  517 IALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of CX299033 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.855e-20
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:    2 VALTYFQLAPEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLLFVRHIYRSIKCE 271
            +ALTYFQL+ ED+ WWWRS L  GSTG FI          RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL F+R+IY ++K +
Sbjct:  517 IALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of CX299033 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.855e-20
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:    2 VALTYFQLAPEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLLFVRHIYRSIKCE 271
            +ALTYFQL+ ED+ WWWRS L  GSTG FI          RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL F+R+IY ++K +
Sbjct:  517 IALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of CX299033 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.855e-20
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:    2 VALTYFQLAPEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLLFVRHIYRSIKCE 271
            +ALTYFQL+ ED+ WWWRS L  GSTG FI          RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL F+R+IY ++K +
Sbjct:  517 IALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGTVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of CX299033 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 2
Query:    2 VALTYFQLAPEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLLFVRHIYRSIKCE 271
            + + YFQL  ED+ WWWR+FL  G +  ++          + D+  F+ +  +FGY A +   F+L+ GT+GF A+ +FVR IY ++K +
Sbjct:  553 IVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CX299033 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 2
Query:    2 VALTYFQLAPEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLLFVRHIYRSIKCE 271
            + + YFQL  ED+ WWWR+FL  G +  ++          + D+  F+ +  +FGY A +   F+L+ GT+GF A+ +FVR IY ++K +
Sbjct:  553 IVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CX299033 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 2
Query:    2 VALTYFQLAPEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLLFVRHIYRSIKCE 271
            + + YFQL  ED+ WWWR+FL  G +  ++          + D+  F+ +  +FGY A +   F+L+ GT+GF A+ +FVR IY ++K +
Sbjct:  553 IVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CX299033 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.595e-14
Identity = 31/90 (34.44%), Postives = 52/90 (57.78%), Query Frame = 2
Query:    2 VALTYFQLAPEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASLLFVRHIYRSIKCE 271
            + + YFQL  ED+ WWWR+FL  G +  ++          + D+  F+ +  +FGY   +   F+L+ GT+GF A+ +FVR IY ++K +
Sbjct:  554 IVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
The following BLAST results are available for this feature:
BLAST of CX299033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PHG1B_DICDI1.162e-2252.22Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S1_RAT1.855e-2053.33Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]
TM9S1_PONAB1.855e-2053.33Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_MOUSE1.855e-2053.33Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_HUMAN1.855e-2053.33Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_BOVIN1.855e-2053.33Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
TM9S4_PONAB8.918e-1535.56Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_HUMAN8.918e-1535.56Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN8.918e-1535.56Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
TM9S4_RAT2.595e-1434.44Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionC06018B08SK RindPdig24 Citrus clementina cDNA clone C06018B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299033 ID=CX299033; Name=CX299033; organism=Citrus clementina; type=EST; length=522bp
TGTGGCTTTGACTTACTTCCAACTTGCTCCTGAAGATCATGAATGGTGGT
GGAGGTCATTTCTTTGTGGTGGATCTACTGGTGCTTTCATCTATGCGTAC
TGCTTGTACTACTACTATGCACGATCAGATATGTCAGGTTTTATGCAGAC
CTCATTTTTCTTTGGGTACATGGCTTGCATCTGTTATGGCTTCTTCCTTA
TGCTGGGCACAGTGGGTTTCCGTGCTTCACTGCTCTTTGTTCGACATATA
TACAGGTCAATCAAGTGTGAGTAAGGGCTTGTTCTTTTCGGTCCATTAAT
AGTGCTCACAGGGTTTAGGAGTTATCTTGTTGCTAGTTTGTTCATGTTTT
TATTAGGGGACCTTGTGTTTTTTTTCCCTCTTATTTTCTGTTTAGAGCTA
TACTTGTAACTTGCCTATAAATAGGCCCTCTGTTTTTATTTGATGTAGTA
GACTTGATATTTACAAAGAGATATGTTGTTCTTTTTACTTCCTATCCAAA
AAAAAAAAAAAAAAAAAAAAAA
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