CX299040

Overview
NameCX299040
Unique NameCX299040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299040 vs. ExPASy Swiss-Prot
Match: PHYD1_BOVIN (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Bos taurus GN=PHYHD1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.406e-40
Identity = 84/169 (49.70%), Postives = 108/169 (63.91%), Query Frame = 2
Query:  170 GYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV----TDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDATI 649
            G++VLE F S +E EAM++++D ++   D    C T   FST  ++++    + DYF  S +KI FFFE+  F   GN   P E SINK+GHALH LDP+F+  + S K   L  SLG + PV +QSMYIFKQP  GGEV PHQD SFL TEP     GLW+ALEDA +
Sbjct:   16 GFLVLEGFLSADECEAMQRRIDEIVAKMDVPLHCRTE--FSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDKQGNFLVPPEKSINKIGHALHALDPIFRCVTHSHKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVAPHQDASFLYTEPLGRVLGLWIALEDAML 182          

HSP 2 Score: 28.8758 bits (63), Expect = 2.406e-40
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  652 NGCLWAIPGSH 684
            NGCLW IPGSH
Sbjct:  184 NGCLWFIPGSH 194          
BLAST of CX299040 vs. ExPASy Swiss-Prot
Match: PHYD1_DANRE (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Danio rerio GN=phyhd1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.534e-39
Identity = 80/168 (47.62%), Postives = 107/168 (63.69%), Query Frame = 2
Query:  167 QGYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKVTD----DYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDA 643
            +GY+VLE   S EE +A+R++M  +++  D    C T   FST + +++      DYF  S +KI FFFE+  F D G    PKE S+NK+GHALH  +P+FK+ + S K  N+   L    PV +QSMYIFKQPGIGGEV PHQD +FL T+P     G+W+ALEDA
Sbjct:   15 EGYLVLEGLLSPEECDALRRRMSEIIESMDVPEHCRTQ--FSTDHDEQLKTQGNADYFITSGDKIRFFFEKGVFDDKGEFVVPKEQSLNKIGHALHAYEPLFKRVTHSPKVQNICKKLELINPVILQSMYIFKQPGIGGEVTPHQDATFLYTQPLGRVMGVWVALEDA 180          

HSP 2 Score: 28.8758 bits (63), Expect = 1.534e-39
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  652 NGCLWAIPGSH 684
            NGCLW IPGSH
Sbjct:  184 NGCLWFIPGSH 194          
BLAST of CX299040 vs. ExPASy Swiss-Prot
Match: PHYD1_HUMAN (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Homo sapiens GN=PHYHD1 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 5.757e-39
Identity = 83/169 (49.11%), Postives = 107/169 (63.31%), Query Frame = 2
Query:  170 GYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV----TDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDATI 649
            G++VLE F S EE  AM++++  ++   D    C T   FST  ++++    + DYF  S +KI FFFE+  F + GN   P E SINK+GHALH  DPVFK  + S K   L  SLG + PV +QSMYIFKQP  GGEV PHQD SFL TEP     G+W+A+EDAT+
Sbjct:   16 GFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTE--FSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATL 182          

HSP 2 Score: 28.8758 bits (63), Expect = 5.757e-39
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  652 NGCLWAIPGSH 684
            NGCLW IPGSH
Sbjct:  184 NGCLWFIPGSH 194          
BLAST of CX299040 vs. ExPASy Swiss-Prot
Match: PHYD1_MOUSE (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Mus musculus GN=Phyhd1 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.142e-36
Identity = 78/169 (46.15%), Postives = 105/169 (62.13%), Query Frame = 2
Query:  170 GYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKVTD----DYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDATI 649
            G+++LE F + +E  AM++++  ++   D    C T   FST   +++      DYF  S +KI FFFE+  F + GN   P E SINK+GHALH  DPVF+  + S K   L+ SLG + PV +QSMYIFKQP  GGEV PHQD +FL TEP     GLW+A+EDA +
Sbjct:   16 GFLLLEGFFTADECVAMQQRIGEIVAEMDVPLHCRTE--FSTQEDEQLQTQGKTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFRSITHSPKVQALVRSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDATFLYTEPLGRVLGLWIAMEDAML 182          

HSP 2 Score: 28.8758 bits (63), Expect = 1.142e-36
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  652 NGCLWAIPGSH 684
            NGCLW IPGSH
Sbjct:  184 NGCLWFIPGSH 194          
BLAST of CX299040 vs. ExPASy Swiss-Prot
Match: PHYD1_CAEEL (Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog OS=Caenorhabditis elegans GN=Y105C5B.9 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.487e-36
Identity = 72/164 (43.90%), Postives = 109/164 (66.46%), Query Frame = 2
Query:  170 GYVVLESFASDEEIEAMRKQMDHLLDGFDCST--SSVFSTTNQQK-VTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDATI 649
            G+VV+E+  +D+EI+ M+K +  +++  D +    SVFST ++ K   D YF  S++KI FFFEE A   DG L  PK+ ++NK+GH LH LDP F+K + + K  N+   +GY+ P  +QSMYIFKQP IGG V  H D++FL  +P    TG+W+A+++A++
Sbjct:   12 GFVVVENVFNDQEIDEMKKSISKIVNDMDLAEHPKSVFSTYDEDKHAADSYFLNSSDKIRFFFEEGAVDKDGELTVPKDKALNKIGHGLHFLDPTFEKMTFNSKIQNIFKEIGYQEPGVVQSMYIFKQPKIGGAVTDHVDSTFLRVDPIDHLTGVWIAIDEASV 175          

HSP 2 Score: 25.409 bits (54), Expect = 1.487e-36
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  652 NGCLWAIPGSHK 687
            NGCL  IPGSHK
Sbjct:  177 NGCLSFIPGSHK 188          
BLAST of CX299040 vs. ExPASy Swiss-Prot
Match: PHYD1_RAT (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Rattus norvegicus GN=Phyhd1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.465e-36
Identity = 77/169 (45.56%), Postives = 103/169 (60.95%), Query Frame = 2
Query:  170 GYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV----TDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDATI 649
            G+++LE F + +E   M++++  ++   D    C T   FST   +++      DYF  S +KI FFFE+  F + GN   P E SINK+GHALH  DPVF+  + S K   L+ SLG + PV +QSMYIFKQP  GGEV PHQD +FL TEP     GLW+A EDA +
Sbjct:   16 GFLLLEGFFTADECVVMQQRIGEIVAEMDVPLHCRTE--FSTQEDEQLQTQGNTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFRSITHSPKVQALVRSLGLQIPVVVQSMYIFKQPHFGGEVSPHQDATFLYTEPLGRVLGLWIATEDAML 182          

HSP 2 Score: 28.8758 bits (63), Expect = 9.465e-36
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  652 NGCLWAIPGSH 684
            NGCLW IPGSH
Sbjct:  184 NGCLWFIPGSH 194          
BLAST of CX299040 vs. ExPASy Swiss-Prot
Match: PHYD1_DICDI (Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=phyhd1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.607e-35
Identity = 74/161 (45.96%), Postives = 109/161 (67.70%), Query Frame = 2
Query:  170 GYVVLESFASDEEIEAMRKQMDHLLDGFDC-STSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATI 649
            G++++ +F + EEI+ +R +M  L+D  D  ST S+F+T+ Q++  DDYF  S +KI +FFE+ +  +DG L  PK+++ NKVGHALH+L+P F++FS S+K  +L++SLG         MYIFK   IGGEV  HQD++FL T P T   +W A ED+TI
Sbjct:   15 GFLIIRNFNTTEEIDIVRGEMKKLIDELDTPSTISIFTTSEQERKVDDYFLGSGDKIRYFFEKGSI-EDGKLIVPKDMAFNKVGHALHDLNPKFEEFSYSQKIHDLIYSLGIYNKALSGIMYIFKNQKIGGEVDIHQDSTFLHTTPLTTHAIWFAFEDSTI 174          

HSP 2 Score: 23.483 bits (49), Expect = 1.607e-35
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  652 NGCLWAIPGSH 684
            NGCL  +PGSH
Sbjct:  176 NGCLRGLPGSH 186          
BLAST of CX299040 vs. ExPASy Swiss-Prot
Match: PHYD1_CAEBR (Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog OS=Caenorhabditis briggsae GN=CBG00325 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.845e-35
Identity = 70/164 (42.68%), Postives = 106/164 (64.63%), Query Frame = 2
Query:  170 GYVVLESFASDEEIEAMRKQMDHLLDGFDCST--SSVFSTTNQQK-VTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDATI 649
            G+VV+E+  +D+EIE ++  +  +++  + +    SVFST ++ K   D YF  S++KI FFFEE A   DG L  PK+ ++NK+GH LH LDP FKK + + K   +   +GY+ P  +QSMYIFKQP IGG V  H D++FL   P    TG+W+A+++A++
Sbjct:   12 GFVVIENVFNDQEIEEIKGAIGKIVEDMNLAEHPKSVFSTYDEDKHAADSYFLNSSDKIRFFFEEGAVDKDGELTVPKDKALNKIGHGLHLLDPTFKKMTFNSKIQKIFQGIGYQEPEVVQSMYIFKQPKIGGAVTDHVDSTFLRVNPIDHLTGVWIAIDEASV 175          

HSP 2 Score: 25.409 bits (54), Expect = 7.845e-35
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  652 NGCLWAIPGSHK 687
            NGCL  IPGSHK
Sbjct:  177 NGCLSFIPGSHK 188          
The following BLAST results are available for this feature:
BLAST of CX299040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PHYD1_BOVIN2.406e-4049.70Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_DANRE1.534e-3947.62Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_HUMAN5.757e-3949.11Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_MOUSE1.142e-3646.15Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_CAEEL1.487e-3643.90Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_RAT9.465e-3645.56Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_DICDI1.607e-3545.96Phytanoyl-CoA dioxygenase domain-containing protei... [more]
PHYD1_CAEBR7.845e-3542.68Phytanoyl-CoA dioxygenase domain-containing protei... [more]
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Properties
Property NameValue
Genbank descriptionC06018C03SK RindPdig24 Citrus clementina cDNA clone C06018C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299040 ID=CX299040; Name=CX299040; organism=Citrus clementina; type=EST; length=695bp
AATTAACCTTCAGAAAAAAATAAAGAAACAGGGGTTGAAGATAATAAAAA
TACAACGATAAGACCTGTATTTGAGCAGCAGATTCAAACGAAACAAGCAA
GCAGAACGCAAGGACATGGGGCTCGCCGGAAATCTCAACTCAGACAATCT
CAACTTCTTCAACTCTCAAGGATATGTGGTGTTAGAATCATTTGCGAGTG
ATGAAGAGATTGAAGCCATGAGGAAGCAAATGGATCATTTACTTGACGGC
TTTGACTGCTCCACCTCCTCTGTTTTCTCCACAACGAATCAGCAAAAAGT
GACTGATGATTACTTCTATGAGAGTGCTGAAAAGATTTCGTTTTTCTTTG
AAGAAAAAGCATTTGGGGATGATGGAAACTTAAAGCAACCAAAAGAACTC
TCTATCAATAAAGTTGGCCATGCATTACACGAACTTGATCCAGTTTTCAA
AAAGTTCTCTCGCTCTGAGAAAACATCAAATTTGCTGCACTCTTTGGGTT
ACAAAAGGCCTGTGGACATTCAATCAATGTACATATTTAAGCAACCAGGC
ATTGGAGGTGAAGTTGTGCCACACCAGGATAACTCATTCCTAATAACTGA
ACCATCAACTTGCACAGGGCTGTGGTTGGCTCTAGAAGATGCAACAATAT
AAACGGTTGCCTTTGGGCCATTCCCGGATCACATAAAATGGCCTT
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