CX299253

Overview
NameCX299253
Unique NameCX299253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299253 vs. ExPASy Swiss-Prot
Match: RETOL_ARATH (Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.332e-27
Identity = 67/233 (28.76%), Postives = 122/233 (52.36%), Query Frame = 2
Query:    2 FGIIVSWKIKLXXXXXXXXXXXXXRTLEQNATRLLHKWQYIADRVHEDLF----ISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESVVYLDGFKIRESINADVLINERF-VKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTK 685
            +G+++ +K+KL             + ++  A  ++HKWQ +  +   +LF    I P   ++  T+     +LFLG  D ++ L+ + FPELGL KE+C EM++ +S ++ D       ++  V ++       F   K+D+V   IP + +E  +    E        LVF PYGGKM+E++ +  PFPHR   ++ + Y   W++ + E  + +LN  + L+++MT +V+K
Sbjct:  244 YGVVLGYKVKLVPVPSVVTVFRVEQYMDSGAVDMVHKWQSVGPKTDPNLFMRMLIQPVTRKKVKTVRASVVALFLGRADEVVALLSKEFPELGLKKENCSEMTWFQSALWWDNRLNATQVDPKVFLDRNLDTSSFGKRKSDYVATAIPKKGIESLFKKMIELGKIG---LVFNPYGGKMAEVAVNAKPFPHR-NKLFKIQYSVNWKENSAEIEKGYLNQAKVLYSFMTGFVSK 472          
BLAST of CX299253 vs. ExPASy Swiss-Prot
Match: RETO_PAPSO (Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.860e-27
Identity = 72/229 (31.44%), Postives = 110/229 (48.03%), Query Frame = 2
Query:    2 FGIIVSWKIKLXXXXXXXXXXXXXRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESVVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTK 685
            +G I +WKIKL             + +  ++A+ LLHKWQY+AD + ED  +S       +    +F  L LG  D    ++ + FPELGL  ++ +EMS+ ES+ +L G      +N   L   +F +R F  K DF  V +P+     A ++  E+     G +    +GGKMSEIS    PFPHR G      Y   W    +         + K ++Y+ P+V+K
Sbjct:  232 WGAIYAWKIKLLPVPEKLTVFRVTKNVGIEDASSLLHKWQYVADELDEDFTVSVLGGVNGNDAWLMFLGLHLGRKDAAKTIIDEKFPELGLVDKEFQEMSWGESMAFLSGLDTISELNNRFL---KFDERAFKTKVDFTKVSVPLNVFRHALEMLSEQPG---GFIALNGFGGKMSEISTDFTPFPHRKGTKLMFEYIIAWNQDEESKIGEFSEWLAKFYDYLEPFVSK 454          
BLAST of CX299253 vs. ExPASy Swiss-Prot
Match: RETO_ESCCA (Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.484e-23
Identity = 69/229 (30.13%), Postives = 105/229 (45.85%), Query Frame = 2
Query:    2 FGIIVSWKIKLXXXXXXXXXXXXXRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESVVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTK 685
            +G I +WKIKL             + +    AT LLHKWQ++A+ + ED  +S     +   +         G            FPELGL +ED  EMS+ ES  YL G +    +N   L   +F +R F  K D    P+P +A  G  +   +E     G +    +GG+MS+IS    PFPHR+G    + Y   W  +  +     L+ + K++ +M P+V+K
Sbjct:  228 WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPN---GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSK 450          
The following BLAST results are available for this feature:
BLAST of CX299253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RETOL_ARATH2.332e-2728.76Reticuline oxidase-like protein OS=Arabidopsis tha... [more]
RETO_PAPSO8.860e-2731.44Reticuline oxidase OS=Papaver somniferum GN=BBE1 P... [more]
RETO_ESCCA3.484e-2330.13Reticuline oxidase OS=Eschscholzia californica GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionC06020E06SK RindPdig24 Citrus clementina cDNA clone C06020E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299253 ID=CX299253; Name=CX299253; organism=Citrus clementina; type=EST; length=725bp
TTTTGGAATCATTGTTTCATGGAAAATAAAGCTAGTTGCTGTTCCGCCAA
CTGTGACTGTATTTGCCGTCCCAAGAACCTTGGAACAAAATGCAACAAGA
CTACTTCACAAATGGCAGTACATTGCAGACAGGGTCCATGAAGATTTGTT
CATCTCACCCTTCTTATACAGAGAGAATTCCACTATGGTCTGTTTATTCA
CATCGTTGTTTCTAGGTGGGGTTGATAGGCTACTTCCATTGATGCAGCAG
AGCTTCCCTGAGCTCGGATTAACTAAAGAAGACTGCAGAGAAATGAGCTT
CATTGAATCCGTCGTTTACCTTGACGGATTCAAGATTAGAGAGTCAATTA
ATGCAGATGTATTGATTAATGAGAGATTTGTCAAAAGGTTTTTCATAGGA
AAAGCAGACTTTGTAACAGTGCCGATTCCTGTGGAAGCTCTTGAAGGGGC
ATATGATTTATTTTATGAGGAGGATCCACGAACCTACGGCCTTCTCGTGT
TTTTTCCTTACGGTGGAAAAATGAGTGAGATTTCAGAGTCCGAAATTCCA
TTCCCACATAGAGCAGGCAACATATACACACTTTTGTACTATGCGGAATG
GCAAGATGCAACTGATGAAGCGTATCAAAGGCACTTAAATATGGTCAGAA
AGCTGTTCAATTATATGACTCCTTATGTTACAAAAATCCTCGAGCAGCAT
ATATTAATACAGGGATCTTGACATT
back to top