CX299255

Overview
NameCX299255
Unique NameCX299255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299255 vs. ExPASy Swiss-Prot
Match: NDHM_POPJC (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii GN=ndhM PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.329e-21
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = -2
Query:  177 QGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNN 335
            +GA LTEYTLRLIGSD+EHYIRKLLYDGEIKYNM+ARVLNFSMGKPRI+FNN+
Sbjct:  145 EGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKYNMNARVLNFSMGKPRILFNND 197          
BLAST of CX299255 vs. ExPASy Swiss-Prot
Match: NDHM_VITVI (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera GN=ndhM PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = -2
Query:  180 QGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNN 335
            +GA LTEYTLRLIGSD+EHYIRKLLYDGEIKYNM+ARVLNFSMGKPRI+FN+
Sbjct:  150 EGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKYNMNARVLNFSMGKPRILFND 201          
BLAST of CX299255 vs. ExPASy Swiss-Prot
Match: NDHM_ORYSJ (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhM PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 45/56 (80.36%), Postives = 53/56 (94.64%), Query Frame = -2
Query:  168 QGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNELP 335
            +GA L+EYTLRLIGSDLEH+IRKLLYDGEIKYNM +RVLNFSMGKPRI FN++++P
Sbjct:  162 EGAELSEYTLRLIGSDLEHFIRKLLYDGEIKYNMMSRVLNFSMGKPRIKFNSSQIP 217          
BLAST of CX299255 vs. ExPASy Swiss-Prot
Match: NDHM_ORYSI (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. indica GN=ndhM PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 45/56 (80.36%), Postives = 53/56 (94.64%), Query Frame = -2
Query:  168 QGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNELP 335
            +GA L+EYTLRLIGSDLEH+IRKLLYDGEIKYNM +RVLNFSMGKPRI FN++++P
Sbjct:  162 EGAELSEYTLRLIGSDLEHFIRKLLYDGEIKYNMMSRVLNFSMGKPRIKFNSSQIP 217          
BLAST of CX299255 vs. ExPASy Swiss-Prot
Match: NDHM_ARATH (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana GN=ndhM PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 43/55 (78.18%), Postives = 51/55 (92.73%), Query Frame = -2
Query:  171 QGALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNEL 335
            +GA LTEYTLRLIGSD+EHYIRK+L+DGEI+YNMDARVLNFSMGKPR+ FN + +
Sbjct:  151 EGAPLTEYTLRLIGSDVEHYIRKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 205          
BLAST of CX299255 vs. ExPASy Swiss-Prot
Match: NDHM_PHYPA (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Physcomitrella patens GN=ndhM PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.952e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = -2
Query:  192 GALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRI 332
            GA LTEYTLRLIGSDLEHYIRKLL  GE+KYN+D RVLNFSMGKPRI
Sbjct:  146 GADLTEYTLRLIGSDLEHYIRKLLLAGELKYNLDCRVLNFSMGKPRI 192          
BLAST of CX299255 vs. ExPASy Swiss-Prot
Match: NDHM_GLOVI (NAD(P)H-quinone oxidoreductase subunit M OS=Gloeobacter violaceus GN=ndhM PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = -2
Query:  192 GALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRI 332
            G  LTEY LR IGSDLE++IR LL  GEI YN+D+RVLNFSMG+P++
Sbjct:   61 GLALTEYNLRRIGSDLENFIRGLLQQGEIAYNLDSRVLNFSMGRPQV 107          
BLAST of CX299255 vs. ExPASy Swiss-Prot
Match: NDHM_NOSP7 (NAD(P)H-quinone oxidoreductase subunit M OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhM PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = -2
Query:  171 GALLTEYTLRLIGSDLEHYIRKLLYDGEIKYNMDARVLNFSMGKPRIMFNNNEL 332
            GA LT+Y LR +GSDLEHY+R LL  GEI YN+ ARV N+SMG P++  ++ ++
Sbjct:   67 GADLTDYNLRRVGSDLEHYLRSLLQLGEISYNLSARVTNYSMGVPQVAIDDKQV 120          
The following BLAST results are available for this feature:
BLAST of CX299255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NDHM_POPJC5.329e-2188.68NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_VITVI2.645e-2088.46NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_ORYSJ7.696e-2080.36NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_ORYSI7.696e-2080.36NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_ARATH1.714e-1978.18NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_PHYPA3.952e-1687.23NAD(P)H-quinone oxidoreductase subunit M, chloropl... [more]
NDHM_GLOVI1.718e-1168.09NAD(P)H-quinone oxidoreductase subunit M OS=Gloeob... [more]
NDHM_NOSP76.530e-1155.56NAD(P)H-quinone oxidoreductase subunit M OS=Nostoc... [more]
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Properties
Property NameValue
Genbank descriptionC06020E08SK RindPdig24 Citrus clementina cDNA clone C06020E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299255 ID=CX299255; Name=CX299255; organism=Citrus clementina; type=EST; length=612bp
AAGGTTTTCTACAGGATGCATTTTTGCATTATCTTGAGGGACACAGGCCA
CTTGGAGAAACTCTTTGAATGCTTGTGGAACATCATGGTACATCTGGATA
TATTGACTTTCATTTCACTACCCATTTCTGTAAGATCCTTAATCTATCAC
TGTGCAACATCTTGAGTTGGGAGTTCGTTGTTATTGAACATGATACGGGG
CTTCCCCATGCTGAAGTTTAGTACCCTTGCATCCATGTTGTATTTAATCT
CCCCATCATATAGCAGTTTCCGTATGTAATGCTCTAAGTCAGAACCAATC
AGCCGGAGTGTGTATTCTGTCAACAGGGCGCCCTGCATCATTCATCAGTT
CTCAATGAAGGCAGAACAGGGAATCAACAAAAGAAACATAGTTGAGAGCT
ATTGTAAATGTTCATTTAGGATGATAGATGAGGCGGATTTGTTATTTATC
GTGTATGGTGAAAGTTATCCTCTTCGATATAGATACAATACGTATAGTTG
TTTCAAGAAACAGAATCACAAATTATATGTGATTTTGGCTTTAGATTCAT
TTGGTTTCTTTTCAGCTCTAATTTTATATAGAACTAATCAGCCTCAGCTG
ATTTCCTATTTC
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