CX299681

Overview
NameCX299681
Unique NameCX299681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299681_ssr7 microsatellite CX299681_ssr7:7..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP6_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Oryza sativa subsp. japonica GN=SAP6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.416e-17
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGFKCRC  TFCS+HRY+D H C FDYK  G++ IAK NP+VKADKI KI
Sbjct:  108 VGLTGFKCRCGGTFCSMHRYADSHKCTFDYKQVGREQIAKQNPLVKADKITKI 160          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP4_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Oryza sativa subsp. japonica GN=SAP4 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.416e-17
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF CRC   +C+LHRYSDKH C FDY++A +DAIAKANPVVKA+K+ KI
Sbjct:  121 VGLTGFNCRCGNMYCALHRYSDKHECQFDYRTAARDAIAKANPVVKAEKLDKI 173          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP8_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.155e-17
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF CRC   +C++HRYSDKH+C FDY++A +DAIAKANPVVKA+K+ KI
Sbjct:  119 VGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 171          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP8_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. indica GN=SAP8 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.155e-17
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF CRC   +C++HRYSDKH+C FDY++A +DAIAKANPVVKA+K+ KI
Sbjct:  119 VGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 171          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP5_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.556e-16
Identity = 34/53 (64.15%), Postives = 46/53 (86.79%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF+CRC + FCS HRYSD+H+C +DYK+AG++AIA+ NPVVKA K+ K+
Sbjct:  108 VGLTGFRCRCGELFCSEHRYSDRHDCSYDYKTAGREAIARENPVVKAAKMVKV 160          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP9_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Oryza sativa subsp. japonica GN=SAP9 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.951e-16
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF+CRC  TFCS HRY++ H+C FDYK AG+D IAK NPVV A+KI KI
Sbjct:  109 VGLTGFQCRCGGTFCSTHRYTEAHDCTFDYKKAGRDQIAKQNPVVIAEKINKI 161          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP7_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.326e-15
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +G+ GFKC+C  TFC  HRY +KH C FD+K  G+DAIAKANP+VKADK+ +I
Sbjct:  123 VGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP2_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Arabidopsis thaliana GN=SAP2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.326e-15
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGFKCRC   FC  HRY+D H+C F+Y +A Q+AIAKANPVVKA+K+ KI
Sbjct:  121 VGLTGFKCRCGSLFCGTHRYADVHDCSFNYHAAAQEAIAKANPVVKAEKLDKI 173          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP11_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 11 OS=Oryza sativa subsp. japonica GN=SAP11 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.731e-15
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = -1
Query:  259 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI 408
            +GLTGF+CRC + +C  HRYSD+H+C FDYKSA +DAIA+ NPVV+A KI
Sbjct:  118 VGLTGFRCRCGELYCGAHRYSDRHDCSFDYKSAARDAIARENPVVRAAKI 167          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP2_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Oryza sativa subsp. japonica GN=SAP2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GL GF+CRC   FC  HRYSD+H+C +DY+ AG+DAIA+ANPVV+ DK+ K+
Sbjct:   96 VGLMGFECRCGAVFCGAHRYSDRHDCGYDYRGAGRDAIARANPVVRPDKVEKL 148          
The following BLAST results are available for this feature:
BLAST of CX299681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SAP6_ORYSJ2.416e-1769.81Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ORYSJ2.416e-1769.81Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ORYSJ3.155e-1767.92Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ORYSI3.155e-1767.92Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP5_ARATH4.556e-1664.15Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP9_ORYSJ5.951e-1667.92Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP7_ARATH1.326e-1562.26Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP2_ARATH1.326e-1566.04Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP11_ORYSJ1.731e-1566.00Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP2_ORYSJ2.261e-1560.38Zinc finger A20 and AN1 domain-containing stress-a... [more]

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Properties
Property NameValue
Genbank descriptionC07001A09SK NTLeaf1 Citrus clementina cDNA clone C07001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299681 ID=CX299681; Name=CX299681; organism=Citrus clementina; type=EST; length=408bp
ACGAGGGAGAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTT
GTTTTTTAATGAAATATCACTGAACGATATATAAACCAAATGTTTTGACA
TTGAGTTCCATTATGCAATAATAAAGCAACCAACTGTGCACAGACACAAA
TAAATACCGAAGCAATAGTACTAGCAGCTTATTATCATTAAAACCATAGT
CCATTCATCGAACCACCTAAAGCCCACCACATTTTACAACTCCTTGTCAG
ATCTTCTAAATCTTATCCGCCTTCACAACAGGGTTCGCTTTAGCAATGGC
ATCCTGCCCTGCACTCTTGTAATCAAACACACAGTTGTGCTTATCAGAAT
ATCGATGCAAGGAGCAAAATGTCTGCTCACACCTACATTTAAACCCCGTC
AAACCAAT
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