CX299725

Overview
NameCX299725
Unique NameCX299725
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299725_ssr1 microsatellite CX299725_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.208e-59
Identity = 123/170 (72.35%), Postives = 138/170 (81.18%), Query Frame = 3
Query:   27 AGASSVWML-NQSSFLGSCQQLSSVSKLVASSRPGPVPPSLFIVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            +G  SV ++ N+S+FLG+  Q  +V     SS    +     +VEA T+  T  EDR ARHSRIRKK++GT ERPRLCVFRSNKHLYVQVIDDTKMHTLASAST QKPISEE DY+SGPTIEVAKKVGE+IAKSCLEKGITKVAFDRGGYPYHGRI+ALA AAREHGLQF
Sbjct:    5 SGCGSVSLITNRSAFLGNGLQHRAVFLKPWSS--SSLQSRSMVVEAKTK--TSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 9.624e-47
Identity = 90/128 (70.31%), Postives = 107/128 (83.59%), Query Frame = 3
Query:  150 IVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            +V A  +  T + DR ARH R+RKK+ GT ERPRL VFRSNKHLY QVIDDTK  TL SASTM K +S++L+YS+GPT+EVA+K+GE+IAKSCLEKGITKV FDRGG+ YHGRI+ALADAARE+GL F
Sbjct:   43 VVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGLDF 170          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_THESQ (50S ribosomal protein L18 OS=Thermotoga sp. (strain RQ2) GN=rplR PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 3
Query:  168 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            +  +K+E R  RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + E+L  +    +E AK+VG +I K  LEKGI KV FDRGGY YHGR++ALAD ARE GL+F
Sbjct:    3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_THEP1 (50S ribosomal protein L18 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplR PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 3
Query:  168 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            +  +K+E R  RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + E+L  +    +E AK+VG +I K  LEKGI KV FDRGGY YHGR++ALAD ARE GL+F
Sbjct:    3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_THEMA (50S ribosomal protein L18 OS=Thermotoga maritima GN=rplR PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 3
Query:  168 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            +  +K+E R  RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + E+L  +    +E AK+VG +I K  LEKGI KV FDRGGY YHGR++ALAD ARE GL+F
Sbjct:    3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_THENN (50S ribosomal protein L18 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplR PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.304e-35
Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 3
Query:  168 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            +  ++ E R  RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + E+L  +    IE AK+VG +I K  +EKGI KV FDRGGY YHGR++ALAD ARE GL+F
Sbjct:    3 KKESRNERRIRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NIEAAKEVGLLIGKRAIEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus GN=rplR PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.224e-35
Identity = 76/114 (66.67%), Postives = 86/114 (75.44%), Query Frame = 3
Query:  192 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            R  RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK  T+ SAST+ K    E    S   IE AKKVGE++AK  LEKGI KV FDRGGY YHGR++ALADAARE GL+F
Sbjct:   11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDK----EFGLDSTNNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_GEOSW (50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.471e-35
Identity = 75/114 (65.79%), Postives = 86/114 (75.44%), Query Frame = 3
Query:  192 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            R  RH+R+RKKI GT ERPRL VFRSNKH+Y Q+IDD K  T+ SAST+ K    E D  S   IE AKKVGE++AK  LEKGI KV FDRGGY YHGR++ALADAARE GL+F
Sbjct:   11 RKKRHARVRKKIFGTAERPRLNVFRSNKHIYAQIIDDMKAVTIVSASTLDK----EFDLESTGNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_BACST (50S ribosomal protein L18 OS=Bacillus stearothermophilus GN=rplR PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.451e-35
Identity = 75/114 (65.79%), Postives = 86/114 (75.44%), Query Frame = 3
Query:  192 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            R  RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK  T+ SAST+ K    E    S   IE AKKVGE++AK  LEKGI +V FDRGGY YHGR++ALADAARE GL+F
Sbjct:   11 RKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDK----EFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_GEOTN (50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.478e-34
Identity = 73/114 (64.04%), Postives = 85/114 (74.56%), Query Frame = 3
Query:  192 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            R  RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDD K  T+ SAST+ K    E    S   I+ AKKVGE++AK  LEKGI +V FDRGGY YHGR++ALADAARE GL+F
Sbjct:   11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDVKSATIVSASTLDK----EFSLDSTNNIDAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120          
The following BLAST results are available for this feature:
BLAST of CX299725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK18_ARATH2.208e-5972.3550S ribosomal protein L18, chloroplastic OS=Arabid... [more]
RK18_ORYSJ9.624e-4770.3150S ribosomal protein L18, chloroplastic OS=Oryza ... [more]
RL18_THESQ1.540e-3660.6650S ribosomal protein L18 OS=Thermotoga sp. (strai... [more]
RL18_THEP11.540e-3660.6650S ribosomal protein L18 OS=Thermotoga petrophila... [more]
RL18_THEMA1.540e-3660.6650S ribosomal protein L18 OS=Thermotoga maritima G... [more]
RL18_THENN1.304e-3559.8450S ribosomal protein L18 OS=Thermotoga neapolitan... [more]
RL18_GEOKA2.224e-3566.6750S ribosomal protein L18 OS=Geobacillus kaustophi... [more]
RL18_GEOSW6.471e-3565.7950S ribosomal protein L18 OS=Geobacillus sp. (stra... [more]
RL18_BACST8.451e-3565.7950S ribosomal protein L18 OS=Bacillus stearothermo... [more]
RL18_GEOTN5.478e-3464.0450S ribosomal protein L18 OS=Geobacillus thermoden... [more]

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Properties
Property NameValue
Genbank descriptionC07001F07SK NTLeaf1 Citrus clementina cDNA clone C07001F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299725 ID=CX299725; Name=CX299725; organism=Citrus clementina; type=EST; length=542bp
GAGAGAGAGAGAGAAAGAAAATGGCAGCTGGTGCGAGCTCAGTTTGGATG
CTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTCTC
AAAATTAGTGGCAAGCAGCAGGCCAGGGCCAGTACCGCCATCTCTTTTCA
TCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGCC
CGCCATTCTCGCATCAGAAAGAAGATTGATGGGACTCCAGAGAGGCCGAG
GCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGATG
ATACTAAGATGCATACACTTGCTTCAGCTTCGACGATGCAGAAGCCCATC
TCTGAGGAGCTTGACTATAGTTCTGGTCCCACGATTGAAGTTGCAAAGAA
GGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAGGGGATCACAAAAG
TAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCTA
GCCGATGCAGCTCGGGAACATGGTCTTCAATTCTAAGAACTA
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