CX299725
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=1 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 2.208e-59 Identity = 123/170 (72.35%), Postives = 138/170 (81.18%), Query Frame = 3 Query: 27 AGASSVWML-NQSSFLGSCQQLSSVSKLVASSRPGPVPPSLFIVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 +G SV ++ N+S+FLG+ Q +V SS + +VEA T+ T EDR ARHSRIRKK++GT ERPRLCVFRSNKHLYVQVIDDTKMHTLASAST QKPISEE DY+SGPTIEVAKKVGE+IAKSCLEKGITKVAFDRGGYPYHGRI+ALA AAREHGLQF Sbjct: 5 SGCGSVSLITNRSAFLGNGLQHRAVFLKPWSS--SSLQSRSMVVEAKTK--TSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 9.624e-47 Identity = 90/128 (70.31%), Postives = 107/128 (83.59%), Query Frame = 3 Query: 150 IVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 +V A + T + DR ARH R+RKK+ GT ERPRL VFRSNKHLY QVIDDTK TL SASTM K +S++L+YS+GPT+EVA+K+GE+IAKSCLEKGITKV FDRGG+ YHGRI+ALADAARE+GL F Sbjct: 43 VVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGLDF 170
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_THESQ (50S ribosomal protein L18 OS=Thermotoga sp. (strain RQ2) GN=rplR PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36 Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 3 Query: 168 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 + +K+E R RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + E+L + +E AK+VG +I K LEKGI KV FDRGGY YHGR++ALAD ARE GL+F Sbjct: 3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_THEP1 (50S ribosomal protein L18 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplR PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36 Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 3 Query: 168 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 + +K+E R RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + E+L + +E AK+VG +I K LEKGI KV FDRGGY YHGR++ALAD ARE GL+F Sbjct: 3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_THEMA (50S ribosomal protein L18 OS=Thermotoga maritima GN=rplR PE=3 SV=2) HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36 Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 3 Query: 168 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 + +K+E R RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + E+L + +E AK+VG +I K LEKGI KV FDRGGY YHGR++ALAD ARE GL+F Sbjct: 3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_THENN (50S ribosomal protein L18 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplR PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.304e-35 Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 3 Query: 168 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 + ++ E R RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + E+L + IE AK+VG +I K +EKGI KV FDRGGY YHGR++ALAD ARE GL+F Sbjct: 3 KKESRNERRIRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NIEAAKEVGLLIGKRAIEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus GN=rplR PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.224e-35 Identity = 76/114 (66.67%), Postives = 86/114 (75.44%), Query Frame = 3 Query: 192 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 R RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK T+ SAST+ K E S IE AKKVGE++AK LEKGI KV FDRGGY YHGR++ALADAARE GL+F Sbjct: 11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDK----EFGLDSTNNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_GEOSW (50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 6.471e-35 Identity = 75/114 (65.79%), Postives = 86/114 (75.44%), Query Frame = 3 Query: 192 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 R RH+R+RKKI GT ERPRL VFRSNKH+Y Q+IDD K T+ SAST+ K E D S IE AKKVGE++AK LEKGI KV FDRGGY YHGR++ALADAARE GL+F Sbjct: 11 RKKRHARVRKKIFGTAERPRLNVFRSNKHIYAQIIDDMKAVTIVSASTLDK----EFDLESTGNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_BACST (50S ribosomal protein L18 OS=Bacillus stearothermophilus GN=rplR PE=1 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 8.451e-35 Identity = 75/114 (65.79%), Postives = 86/114 (75.44%), Query Frame = 3 Query: 192 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 R RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK T+ SAST+ K E S IE AKKVGE++AK LEKGI +V FDRGGY YHGR++ALADAARE GL+F Sbjct: 11 RKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDK----EFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_GEOTN (50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplR PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 5.478e-34 Identity = 73/114 (64.04%), Postives = 85/114 (74.56%), Query Frame = 3 Query: 192 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 R RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDD K T+ SAST+ K E S I+ AKKVGE++AK LEKGI +V FDRGGY YHGR++ALADAARE GL+F Sbjct: 11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDVKSATIVSASTLDK----EFSLDSTNNIDAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120 The following BLAST results are available for this feature:
BLAST of CX299725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299725 ID=CX299725; Name=CX299725; organism=Citrus clementina; type=EST; length=542bpback to top |