CX299732

Overview
NameCX299732
Unique NameCX299732
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig808 contig Ccv1_Contig808:1..535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299732 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 2.868e-43
Identity = 98/159 (61.64%), Postives = 114/159 (71.70%), Query Frame = 2
Query:   71 NSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESRGTDGRRXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDK 535
            NSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  G++GRR                       GVIDEYLERSK NKELND+KRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDK
Sbjct:    5 NSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGRRSAMVFLAATLFSTAAVSASANA-GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDK 160          
BLAST of CX299732 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.075e-32
Identity = 62/73 (84.93%), Postives = 71/73 (97.26%), Query Frame = 2
Query:  317 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDK 535
            + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQKKVPFISDDLE+EC+GK+K
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEK 101          
BLAST of CX299732 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.928e-31
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 2
Query:  317 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDK 535
            V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEK 134          
BLAST of CX299732 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.434e-19
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 2
Query:  314 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKD 532
            GV+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL++EC+GKD
Sbjct:   54 GVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKD 126          
The following BLAST results are available for this feature:
BLAST of CX299732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH2.868e-4361.64Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE5.075e-3284.93Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU1.928e-3184.93Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA6.434e-1958.90Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionC07001G05SK NTLeaf1 Citrus clementina cDNA clone C07001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299732 ID=CX299732; Name=CX299732; organism=Citrus clementina; type=EST; length=535bp
TCTCAACTTCGTGAACTTTGTAAAACAAAAAAAAAAATTTTGCGCTGCAG
CAGGAGCGATGGCAGCCATGAACTCTAGTGTACTCGCATGCAACTATGCC
ATTTCAGGCAGTGCTGGATCATCTGAGCTCAATGCAAAGATTGTTTCGGT
TTCAACCCCGGCTGTGCATGGCCACAAAATGCCTGTGATCAGAGCTCAAC
AAGTTGATGTTTCAAAAGAATCAAGAGGAACTGATGGAAGGAGAGCTGCC
ATGGCTCTTCTAGCAGTTACCCTTTTCACCACAGCTACTGCTGCTGCTTC
TTCTGCTAATGCTGGGGTCATCGATGAATACCTTGAGAGAAGCAAAGCCA
ACAAGGAATTGAATGACCAGAAGAGATTGGCAACAAGTGGTGCAAACTTT
GCCAGAGCATACACTGTTCAATTTGGCACATGCAAGTTCCCTGAGAACTT
CACAGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGTGCCATTCATCTCGG
ATGATTTGGAATTGGAGTGCAAAGGGAAAGATAAA
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