CX299740

Overview
NameCX299740
Unique NameCX299740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:594..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299740 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.079e-37
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 3
Query:    3 QVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 215
            QVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  168 QVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238          
BLAST of CX299740 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.049e-37
Identity = 68/71 (95.77%), Postives = 71/71 (100.00%), Query Frame = 3
Query:    3 QVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 215
            QVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG+KVGLI
Sbjct:  168 QVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLI 238          
BLAST of CX299740 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 3
Query:    3 QVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 215
            QVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV RDAPPGQKVGLI
Sbjct:  168 QVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVARDAPPGQKVGLI 238          
BLAST of CX299740 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.002e-36
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 3
Query:    3 QVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 215
            QVAGGGRTEKP+LKAGNAYHK+RVKRN WPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  168 QVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238          
BLAST of CX299740 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 9.994e-32
Identity = 61/71 (85.92%), Postives = 63/71 (88.73%), Query Frame = 3
Query:    3 QVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 215
            QVAGGGRTEKP LKAGNAYHK++ KRNCWP VRGVAMNPVEHPHGGGNHQHIGHASTVRRD   G KVG I
Sbjct:  169 QVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQI 239          
BLAST of CX299740 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.305e-31
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = 3
Query:    6 VAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 215
            VAGGGR +KP+LKAG AYHK++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  169 VAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238          
BLAST of CX299740 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.105e-30
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 3
Query:    6 VAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 215
            VAGGGR +KP+LKAG AY K++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  169 VAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238          
BLAST of CX299740 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.885e-30
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 3
Query:    6 VAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 215
            VAGGGRT+KPLLKAG +YHK++ KRN WP+VRGVAMNPVEHPHGGGNHQHIGH STVRRDA  G+KVGLI
Sbjct:  169 VAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLI 238          
BLAST of CX299740 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.199e-30
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 3
Query:    6 VAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 215
            VAGGGR +KPLLKAG A+HK+RVKRNCWP+ RGVAMNPV+HPHGGGNHQH+GH++TV R + PGQKVGLI
Sbjct:  168 VAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLI 237          
BLAST of CX299740 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 3
Query:    6 VAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 215
            VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  169 VAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
The following BLAST results are available for this feature:
BLAST of CX299740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL8_SOLLC2.079e-3797.1860S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL83_ARATH6.049e-3795.7760S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL8_TOBAC1.032e-3695.7760S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL81_ARATH3.002e-3695.7760S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL82_ARATH9.994e-3285.9260S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_ANOGA1.305e-3184.2960S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_AEDAL1.105e-3082.8660S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL8_CAEEL1.885e-3082.8660S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL2_SCHPO4.199e-3078.5760S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL8_XENTR9.354e-3080.0060S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC07001H04SK NTLeaf1 Citrus clementina cDNA clone C07001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299740 ID=CX299740; Name=CX299740; organism=Citrus clementina; type=EST; length=514bp
GGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGT
AATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCG
TGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACC
AGCACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAG
AAGGTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGC
TGCTGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCA
CAAATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCA
TTACCTTGGAAAAATTTGTTGAGATTTGGATCTCTGGGATGATCCTGATG
TTAAATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCTAAACT
TTAGTTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCGAAA
AAAAAAAAAAAAAA
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