CX299743

Overview
NameCX299743
Unique NameCX299743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299743_ssr498 microsatellite CX299743_ssr498:498..509. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299743 vs. ExPASy Swiss-Prot
Match: DGDG1_SOYBN (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Glycine max GN=DGD1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.204e-31
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 3 
Query:   12 IRKSFSVPNLSEVVDGGLAFAHYCFTGNEFLRLCTGAIPGTRDYDKQHCTDLHLLPPQVENPIYGW 209
            I KS S+PNL+E+VDGGLAFAHYC TGNEFLRLCTGAIPGTRDYDKQHC DLHLLPPQVENPIYGW
Sbjct:  718 IAKSASMPNLTELVDGGLAFAHYCLTGNEFLRLCTGAIPGTRDYDKQHCKDLHLLPPQVENPIYGW 783
[Close]
BLAST of CX299743 vs. ExPASy Swiss-Prot
Match: DGDG1_LOTJA (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.856e-29
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 3 
Query:   18 KSFSVPNLSEVVDGGLAFAHYCFTGNEFLRLCTGAIPGTRDYDKQHCTDLHLLPPQVENPIYGW 209
            KS S+PNL+E+VDGGLAFAHYC TGNEFLRLCTGA PGTRDYDKQHC DL+LLPPQVENPIYGW
Sbjct:  723 KSASMPNLTELVDGGLAFAHYCLTGNEFLRLCTGATPGTRDYDKQHCKDLNLLPPQVENPIYGW 786
[Close]
BLAST of CX299743 vs. ExPASy Swiss-Prot
Match: DGDG1_ARATH (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Arabidopsis thaliana GN=DGD1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.793e-23
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 3 
Query:    6 RGIRKSFSVPNLSEVVDGGLAFAHYCFTGNEFLRLCTGAIPGTRDYDKQHCTDLHLLPPQVENPIYGW 209
            R +RKS SVP+ +EVVDGGLAF+HY  TGN+FLRLCTGA P T+DYD QHC DL+L+PP V  PI+GW
Sbjct:  741 RKMRKSRSVPSFNEVVDGGLAFSHYVLTGNDFLRLCTGATPRTKDYDNQHCKDLNLVPPHVHKPIFGW 808
The following BLAST results are available for this feature:
BLAST of CX299743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DGDG1_SOYBN5.204e-3189.39Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_LOTJA2.856e-2987.50Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_ARATH1.793e-2369.12Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07001H08SK NTLeaf1 Citrus clementina cDNA clone C07001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299743 ID=CX299743; Name=CX299743; organism=Citrus clementina; type=EST; length=521bp
CGGCACGAGGCATAAGAAAGTCATTTTCAGTGCCTAACCTATCTGAGGTA
GTTGATGGAGGGTTGGCGTTTGCTCACTACTGTTTCACGGGGAATGAGTT
CCTTCGACTATGCACTGGTGCGATACCTGGTACACGAGACTATGACAAGC
AGCATTGTACAGACCTACATCTCTTGCCACCCCAGGTGGAAAATCCTATC
TATGGCTGGTAAATCGGGTACTGCTTTCTAAAAGAAAACCACTCTGTATA
AATTATGTTGCACTACCTAGGGGACAATTTAGGCGTGCTAGTCTGAAGAT
GTAATCTACTTGTATTAACAGTGTATTCATTATGAACCACATATCTAGAA
AGCAAATAGAAATTTTGGTTCCACATGTTTATAGATGCACGAATAGTAGT
CTCTTGTGAAAATAAACCATATTTTTTGTAAGCAATTTCTGATAATTAAT
GAATGTTAATTTAGCTCAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCT
CTCTCTCTCCCTCGTGCCGAA
back to top