CX299747

Overview
NameCX299747
Unique NameCX299747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length451
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10350 contig Ccv1_Contig10350:314..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299747 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 2.963e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:    2 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 220
            IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   75 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
[Close]
BLAST of CX299747 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.963e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:    2 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 220
            IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   65 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137
[Close]
BLAST of CX299747 vs. ExPASy Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 6.601e-33
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:    2 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 220
            IGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   79 IGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151
[Close]
BLAST of CX299747 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 6.601e-33
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:    2 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 220
            IGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   76 IGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
[Close]
BLAST of CX299747 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 139.428 bits (350), Expect = 6.601e-33
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:    2 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 220
            IGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   78 IGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CX299747 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 8.621e-33
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:    2 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 220
            IG+SSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   66 IGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138
[Close]
BLAST of CX299747 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.471e-32
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:    2 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 220
            IGISSK+MGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   73 IGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CX299747 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.471e-32
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:    2 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 220
            IGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   76 IGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
[Close]
BLAST of CX299747 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 1.921e-32
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 220
            IGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 IGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132
[Close]
BLAST of CX299747 vs. ExPASy Swiss-Prot
Match: H2B8_ARATH (Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 4.278e-32
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:    2 IGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 220
            IGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGEL+KHAVSEGTKAVTKFTSS
Sbjct:   66 IGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKFTSS 138
The following BLAST results are available for this feature:
BLAST of CX299747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
H2B_GOSHI2.963e-33100.00Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B3_SOLLC2.963e-33100.00Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B3_ARATH6.601e-3398.63Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720... [more]
H2B1_MEDTR6.601e-3398.63Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B11_ARATH6.601e-3398.63Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B3_MEDTR8.621e-3397.26Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B_CAPAN1.471e-3297.26Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B1_ARATH1.471e-3297.26Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B9_ARATH1.921e-3297.26Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]
H2B8_ARATH4.278e-3295.89Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650... [more]

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Properties
Property NameValue
Genbank descriptionC07002A04SK NTLeaf1 Citrus clementina cDNA clone C07002A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299747 ID=CX299747; Name=CX299747; organism=Citrus clementina; type=EST; length=451bp
TATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACG
ATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAAT
AAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGT
ACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTG
TTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGAA
TTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAATTTTA
CTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAATCTTTGGTGGATTT
TTAGGGTTTGTTTGGATGTACTANAAATTTGGACCTGATCCAGGTGATGT
GCATGTTCATTATGTTAGAATATGAAAATGAAATATGATTTCGGAAAAAA
A
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