CX299750

Overview
NameCX299750
Unique NameCX299750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299750_ssr1 microsatellite CX299750_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10270 contig Ccv1_Contig10270:432..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299750 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.133e-23
Identity = 57/81 (70.37%), Postives = 59/81 (72.84%), Query Frame = -3
Query:  294 MYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASXXXXXXXXXXXXAQGPGEKAVPAPQPAEGA 536
            MYHDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTL DQFEAKRAKNKAS            A+GPG    P   PA  A
Sbjct:  119 MYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDVAPVAAPAPAA 199          
BLAST of CX299750 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.933e-23
Identity = 63/90 (70.00%), Postives = 65/90 (72.22%), Query Frame = -3
Query:  279 MYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASXXXXXXXXXXXXAQGPG---EKAVPAPQPAE-GARKVKK 536
            MYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTL DQFEAKRAKNKAS            A+GPG     A P  Q AE  A+K KK
Sbjct:  119 MYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDIPAAAPPAQTAEVPAKKSKK 208          
BLAST of CX299750 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.592e-23
Identity = 61/90 (67.78%), Postives = 62/90 (68.89%), Query Frame = -3
Query:  279 MYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASXXXXXXXXXXXXAQGP--GEKAVP--APQPAEGARKVKK 536
            MYHDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL DQFEAKR KNKAS            AQGP  GE   P  APQ  E  +K  K
Sbjct:  119 MYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERLAQGPGGGETTTPAGAPQQPEVTKKKSK 208          
BLAST of CX299750 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -3
Query:  390 MYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNK 536
            MYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K
Sbjct:  119 MYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
BLAST of CX299750 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -3
Query:  390 MYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNK 536
            MYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K
Sbjct:  119 MYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
BLAST of CX299750 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -3
Query:  390 MYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNK 536
            MYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K
Sbjct:  119 MYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
BLAST of CX299750 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -3
Query:  390 MYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNK 536
            MYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K
Sbjct:  119 MYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
BLAST of CX299750 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -3
Query:  390 MYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNK 536
            MYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K
Sbjct:  119 MYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
BLAST of CX299750 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -3
Query:  390 MYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNK 536
            MYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K
Sbjct:  119 MYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
BLAST of CX299750 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -3
Query:  390 MYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNK 536
            MYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R+K K
Sbjct:  119 MYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTK 167          
The following BLAST results are available for this feature:
BLAST of CX299750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RL191_ARATH1.133e-2370.3760S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL193_ARATH1.933e-2370.0060S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL192_ARATH9.592e-2367.7860S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL19_XENLA8.139e-1471.4360S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT8.139e-1471.4360S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB8.139e-1471.4360S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE8.139e-1471.4360S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA8.139e-1471.4360S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN8.139e-1471.4360S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]
RL19_BOVIN8.139e-1471.4360S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]

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Properties
Property NameValue
Genbank descriptionC07002A07SK NTLeaf1 Citrus clementina cDNA clone C07002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299750 ID=CX299750; Name=CX299750; organism=Citrus clementina; type=EST; length=538bp
GAGAGAGAGAGAGAACTAGTCTCGAGTNTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTACCAACAGAGATAATGAACATAATACTCATCATTCAACATAA
CAAGAAACTACAAACGGTTCATATGGTTCCAAAATTCAAGGCTTTGTAAG
TAAATAATTTGCCATTAAACAGAAAACAAAATAACTTGGGAAACAAACTC
CTACAAAGAAACCAGAACCAACATTAACATATATAAGTTATCAATCTTCA
GTCTCCATCATCGATGTATCAGCAATCACTTCTTAACTTTCCTAGCTCCC
TCAGCCGGTTGGGGTGCTGGTACTGCCTTCTCTCCAGGTCCCTGTGCTAG
TCGCTCTTTTCTCCTGGCCAGCTTTCTCTCCCTGCTGGCCTTGTTCTTGG
CGCGCTTAGCCTCAAACTGGTCAAAAAGAGTCTTCTCTCTTGCCTTCTCA
GCCTTTGACTTGTGGATACTCTCCATGAGGACACGCTTGTTCTTAAATAC
ATTACCCTTGACCTTCATGTACATGTCATGGTACATGT
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