CX299757

Overview
NameCX299757
Unique NameCX299757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299757_ssr192 microsatellite CX299757_ssr192:192..213. BLAST: Citrus ESTs to Prunus persica proteins V1
CX299757_ssr231 microsatellite CX299757_ssr231:231..242. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig562 contig Ccv1_Contig562:42..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299757 vs. ExPASy Swiss-Prot
Match: GDL79_ARATH (GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.075e-30
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = -2
Query:  244 FTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALDSRT 471
            F TSKVACCGQGPYNG+GLCTP SNLCPNR+++AFWDPFHPSE+A+  I Q+ + GS EYM+PMNLSTI+ +DS T
Sbjct:  291 FVTSKVACCGQGPYNGIGLCTPLSNLCPNRDLFAFWDPFHPSEKASRIIAQQILNGSPEYMHPMNLSTILTVDSMT 366          
BLAST of CX299757 vs. ExPASy Swiss-Prot
Match: LTL1_ARATH (GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.623e-30
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = -2
Query:  250 FTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALDS 471
            F TSKVACCGQGPYNG+GLCTP SNLCPNR++YAFWD FHP+E+AN  IV + +TGS++YM+PMNLST M LDS
Sbjct:  290 FVTSKVACCGQGPYNGIGLCTPVSNLCPNRDLYAFWDAFHPTEKANRIIVNQILTGSSKYMHPMNLSTAMLLDS 363          
BLAST of CX299757 vs. ExPASy Swiss-Prot
Match: GDL67_ARATH (GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.996e-29
Identity = 57/75 (76.00%), Postives = 62/75 (82.67%), Query Frame = -2
Query:  247 FTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALDSR 471
            F TSKVACCGQG YNG G+CTP S LC +RN YAFWDPFHP+E+A   IVQ+ MTGS EYM PMNLSTIMALDSR
Sbjct:  292 FVTSKVACCGQGAYNGQGVCTPLSTLCSDRNAYAFWDPFHPTEKATRLIVQQIMTGSVEYMNPMNLSTIMALDSR 366          
BLAST of CX299757 vs. ExPASy Swiss-Prot
Match: GDL77_ARATH (GDSL esterase/lipase At5g18430 OS=Arabidopsis thaliana GN=At5g18430 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.818e-26
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = -2
Query:  256 FTTSKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMAL 471
            F TSKVACCGQGPYNG+GLCT  SNLCPNR +Y FWD FHP+E+AN  IV+  +TG+T+YM PMNLS+ +AL
Sbjct:  291 FVTSKVACCGQGPYNGMGLCTVLSNLCPNRELYVFWDAFHPTEKANRMIVRHILTGTTKYMNPMNLSSALAL 362          
BLAST of CX299757 vs. ExPASy Swiss-Prot
Match: GDL38_ARATH (GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = -2
Query:  265 FTTSKVACCGQG-PYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTI 471
            F ++  ACCG G  Y G+  C P S+LC  R+ Y FWDP+HPSE AN  I ++ + G  + + P+NLS +
Sbjct:  315 FKSATKACCGNGGQYAGIIPCGPTSSLCEERDKYVFWDPYHPSEAANVIIAKQLLYGDVKVISPVNLSKL 384          
BLAST of CX299757 vs. ExPASy Swiss-Prot
Match: GDL64_ARATH (GDSL esterase/lipase At4g16230 OS=Arabidopsis thaliana GN=At4g16230 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = -2
Query:  256 FTTSKVACCGQ-GPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMAL 471
            F + K+ CC   G   GL  C P S +C +R+ Y FWDP+HP+E AN  I +  ++G T  +YP+N+  +  L
Sbjct:  292 FESEKIPCCSLVGKVGGLIPCGPPSKVCMDRSKYVFWDPYHPTEAANIIIARRLLSGDTSDIYPINIRQLANL 364          
BLAST of CX299757 vs. ExPASy Swiss-Prot
Match: GLIP7_ARATH (GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=GLIP7 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 29/69 (42.03%), Postives = 36/69 (52.17%), Query Frame = -2
Query:  256 SKVACCGQGPYNGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMAL 462
            S  ACCG G Y G   C P    C +RN Y FWD FHP+E AN  I     + S  Y YP+++  +  L
Sbjct:  296 SNEACCGNGRYGGALTCLPLQQPCLDRNQYVFWDAFHPTETANKIIAHNTFSKSANYSYPISVYELAKL 364          
The following BLAST results are available for this feature:
BLAST of CX299757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GDL79_ARATH2.075e-3072.37GDSL esterase/lipase At5g33370 OS=Arabidopsis thal... [more]
LTL1_ARATH4.623e-3074.32GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana ... [more]
GDL67_ARATH2.996e-2976.00GDSL esterase/lipase At4g28780 OS=Arabidopsis thal... [more]
GDL77_ARATH1.818e-2669.44GDSL esterase/lipase At5g18430 OS=Arabidopsis thal... [more]
GDL38_ARATH4.347e-1244.29GDSL esterase/lipase At2g23540 OS=Arabidopsis thal... [more]
GDL64_ARATH6.277e-1139.73GDSL esterase/lipase At4g16230 OS=Arabidopsis thal... [more]
GLIP7_ARATH8.198e-1142.03GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionC07002B03SK NTLeaf1 Citrus clementina cDNA clone C07002B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299757 ID=CX299757; Name=CX299757; organism=Citrus clementina; type=EST; length=475bp
TTTTTTTTTTTTTTTTTTTTTTTTTGGCCAATATCATAAGTTACTACAGC
AACGAAAAATCACAAAAGGCAACAAACAGTAGTACGGGTTTGAAGATACA
TATTATTTTCAACACAGACACACGCAGCATTAATGGCCCTAATTGCCTTG
AAACAGGCCGATATATATTAACTCTGTGTGGGTATGGGGGGATATATATA
TATATATATATATGTATATGTAACAAAGGGGATTGATTGATTATGTCCTT
GAATCCAAGGCCATGATGGTGCTGAGATTCATGGGATACATGTACTCAGT
CGAACCAGTCATGAATTCTTGAACAATAAATCCATTTGCTCTTTCAGATG
GATGAAATGGATCCCAAAATGCATACACATTTCTATTTGGGCATAAGTTG
GATGCCGGAGTGCACAATCCTAGGCCATTGTATGGCCCTTGCCCGCAACA
TGCAACCTTTGATGTTGTAAAGGGG
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