CX299760

Overview
NameCX299760
Unique NameCX299760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length374
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299760_ssr1 microsatellite CX299760_ssr1:1..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3057 contig Ccv1_Contig3057:91..464. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299760 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.253e-33
Identity = 73/95 (76.84%), Postives = 77/95 (81.05%), Query Frame = 1
Query:   94 RHNAPRTNTIKAMAEGKTE--TPTKEAPVGFTPPKLDPNTPSPIFGGITGGLL*KAHVEEFYVITWESPKEQIFEMPTGGAAIIREGPNLLNLAR 372
            RH++ R     A AEGK    T TKEAP GFTPP+LDPNTPSPIF G TGGLL KA VEEFYVITWESPKEQIFEMPTGGAAI+REGPNLL LAR
Sbjct:   44 RHHSIRA---AAAAEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLAR 135          
BLAST of CX299760 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.170e-32
Identity = 70/95 (73.68%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   91 LRHNAPRTNTIKAMAE-GKTETPTKEAPVGFTPPKLDPNTPSPIFGGITGGLL*KAHVEEFYVITWESPKEQIFEMPTGGAAIIREGPNLLNLAR 372
            L+     T  I+AMAE     T  K AP GFTPP+LDPNTPSPIFGG TGGLL KA VEEFYVITWESPKEQIFEMPTGGAAI+R+GPNLL LAR
Sbjct:   37 LKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLAR 131          
BLAST of CX299760 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.528e-32
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 1
Query:  100 NAPRTNTIKAMAEGKTETPTKEAPVGFTPPKLDPNTPSPIFGGITGGLL*KAHVEEFYVITWESPKEQIFEMPTGGAAIIREGPNLLNLAR 372
            +APR   I+AMAE +  T   EAPVGFTPP+LDPNTPSPIFGG TGGLL KA VEEFYVITWESPKEQIFEMPTGGAAI+REG NLL LAR
Sbjct:   40 SAPRP--IRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLAR 127          
BLAST of CX299760 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.294e-31
Identity = 67/90 (74.44%), Postives = 70/90 (77.78%), Query Frame = 1
Query:  103 APRTNTIKAMAEGKTETPTKEAPVGFTPPKLDPNTPSPIFGGITGGLL*KAHVEEFYVITWESPKEQIFEMPTGGAAIIREGPNLLNLAR 372
            A R     + A       TKEAPVGFTPP+LDPNTPSPIF G TGGLL KA VEEFYVITW SPKEQIFEMPTGGAAI+REGPNLL LAR
Sbjct:   42 AIRAEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLAR 131          
BLAST of CX299760 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.916e-31
Identity = 68/90 (75.56%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  118 TIKAMAEGKTETPT-----KEAPVGFTPPKLDPNTPSPIFGGITGGLL*KAHVEEFYVITWESPKEQIFEMPTGGAAIIREGPNLLNLAR 372
            T  A+   KTE+ +     KEAPVGFTPP+LDPNTPSPIF G TGGLL KA VEEFYVITW SPKEQIFEMPTGGAAI+REGPNLL LAR
Sbjct:   38 TKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLAR 127          
BLAST of CX299760 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.440e-30
Identity = 65/90 (72.22%), Postives = 72/90 (80.00%), Query Frame = 1
Query:  103 APRTNTIKAMAEGKTETPTKEAPVGFTPPKLDPNTPSPIFGGITGGLL*KAHVEEFYVITWESPKEQIFEMPTGGAAIIREGPNLLNLAR 372
            A  + + K  AE +T     EAP GF+PP+LDP+TPSPIF G TGGLL KA VEEFYVITWESPKEQIFEMPTGGAAI+REGPNLL LAR
Sbjct:   44 ASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLAR 130          
BLAST of CX299760 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.698e-29
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 1
Query:  154 PTKEAPVGFTPPKLDPNTPSPIFGGITGGLL*KAHVEEFYVITWESPKEQIFEMPTGGAAIIREGPNLLNLAR 372
            P + AP GF PP+LDP+TPSPIFGG TGGLL KA VEEFYVITW SPKEQ+FEMPTGGAAI+REGPNLL LAR
Sbjct:   56 PAEPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLAR 128          
BLAST of CX299760 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.773e-23
Identity = 56/94 (59.57%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   94 RHNAPRTNTIKAMAEGKTETPTKEAPV-GFTPPKLDPNTPSPIFGGITGGLL*KAHVEEFYVITWESPKEQIFEMPTGGAAIIREGPNLLNLAR 372
            R  A R   ++A AE       K A    +T P L+P+TPSPIFGG TGGLL KA  EEFYVITWE+ KEQIFEMPTGGAAI+R+GPNLL   +
Sbjct:   24 RPAARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGK 117          
BLAST of CX299760 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.617e-19
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  166 APVGFTPPKLDPNTPSPIFGGITGGLL*KAHVEEFYVITWESPKEQIFEMPTGGAAIIREGPNLLNLAR 372
            AP  F+ P L+ N P+PIFGG TGGLL KA VEEFY ITW    E +FE+PTGGAAI+R G NLL LAR
Sbjct:   70 APKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLAR 138          
BLAST of CX299760 vs. ExPASy Swiss-Prot
Match: PSAD_MASLA (Photosystem I reaction center subunit II OS=Mastigocladus laminosus GN=psaD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.005e-16
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1
Query:  211 SPIFGGITGGLL*KAHVEEFYVITWESPKEQIFEMPTGGAAIIREGPNLLNLAR 372
            +PIFGG TGGLL KA VEE Y ITW SPKEQ+FEMPTGGAA +R+G NLL LAR
Sbjct:    9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMPTGGAAKMRQGQNLLYLAR 62          
The following BLAST results are available for this feature:
BLAST of CX299760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PSAD_SPIOL5.253e-3376.84Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC1.170e-3273.68Photosystem I reaction center subunit II, chloropl... [more]
PSAD_NICSY1.528e-3279.12Photosystem I reaction center subunit II, chloropl... [more]
PSAD1_ARATH1.294e-3174.44Photosystem I reaction center subunit II-1, chloro... [more]
PSAD2_ARATH4.916e-3175.56Photosystem I reaction center subunit II-2, chloro... [more]
PSAD_CUCSA2.440e-3072.22Photosystem I reaction center subunit II, chloropl... [more]
PSAD_HORVU2.698e-2980.82Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CHLRE3.773e-2359.57Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CYAPA9.617e-1965.22Photosystem I reaction center subunit II, cyanelle... [more]
PSAD_MASLA2.005e-1675.93Photosystem I reaction center subunit II OS=Mastig... [more]

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Properties
Property NameValue
Genbank descriptionC07002B07SK NTLeaf1 Citrus clementina cDNA clone C07002B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299760 ID=CX299760; Name=CX299760; organism=Citrus clementina; type=EST; length=374bp
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGTGAGCGTTATAGAGAGAGCCACTGAGACATA
ATGCCCCACGTACCAACACCATCAAGGCCATGGCTGAAGGAAAAACAGAG
ACACCCACAAAAGAGGCTCCGGTGGGCTTCACCCCACCAAAACTGGACCC
CAACACCCCATCTCCAATCTTCGGAGGCATCACCGGCGGACTGCTGTAGA
AGGCTCACGTGGAAGAGTTTTATGTGATCACATGGGAGTCTCCTAAAGAG
CAAATATTTGAAATGCCCACTGGGGGTGCGGCCATTATAAGAGAAGGTCC
GAATTTGCTGAATCTGGCTAGGAA
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