CX299763

Overview
NameCX299763
Unique NameCX299763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig896 contig Ccv1_Contig896:9..361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.465e-38
Identity = 75/93 (80.65%), Postives = 84/93 (90.32%), Query Frame = 1
Query:   73 MLWAIVLFATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            +LW+++L  T S+IQAKKS +NLKEIT+KVYFDVEI GK AGRIVMGLFGK VPKT ENFRALCTGEKGIGK+GK LHYKGS+FHRIIPSFML
Sbjct:    8 LLWSLLLLGTLSAIQAKKSKENLKEITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFML 100          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 5.762e-35
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 1
Query:   43 MASTKFLPLTMLWAIVLFATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            MA   F+   +L  + LF   +SIQAK   ++LKE+T+KVYFDVEI GK AGR+V+GLFGKAVPKTAENFRALCTGEKG+GKSGKPLHYKGS FHRIIPSFM+
Sbjct:    1 MAKASFI---LLGTLFLFGAIASIQAK---EDLKEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMI 97          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.422e-27
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 1
Query:  145 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            +ITNKV+FD+EI  KPAGRIV GL+GK VPKT ENFRALCTGEKG+G SGKPLHYK S FHRIIP+FM+
Sbjct:   27 KITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMI 95          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.221e-25
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 1
Query:  157 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            +V+FD+ IAGKP GRIVM L+   VPKTAENFRALCTGEKG+GKSGKPLH+KGS FHRIIP FM+
Sbjct:    5 RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRIIPEFMI 69          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.204e-24
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1
Query:  157 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFM 348
            +V+FD+ + G PAGRIVM L+   VPKTAENFRALCTGEKG+GKSGKPLHYKGSTFHR+IP FM
Sbjct:    5 RVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFM 68          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.204e-24
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1
Query:  157 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFM 348
            KV+FD+ IAG PAGRIVM L+    P+TAENFRALCTGEKG+G+SGKPLHYKGSTFHR+IP+FM
Sbjct:    5 KVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFM 68          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.683e-24
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1
Query:  157 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFM 348
            KV+FD+ I G PAGR+VM LF    PKTAENFRALCTGEKG+GK GKPLHYKGSTFHR+IP FM
Sbjct:    5 KVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFM 68          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.977e-24
Identity = 49/75 (65.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  127 SDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            S  ++K+  ++V+FD+ I GK AGRIV  L+   VPKTAENFRALCTGEKG+GK GKPLHYKGSTFHR+I  FM+
Sbjct:    3 STDDVKQARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKLGKPLHYKGSTFHRVIKQFMI 77          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.966e-23
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 1
Query:  148 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFM 348
            +  KVYFD+ +  K AGRIVM L+   VP+TAENFRALCTGE+GIGKSGKPLHYKGS FHR+IP FM
Sbjct:    2 VNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFM 68          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.874e-23
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1
Query:  157 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFM 348
            KVYFD+ + GK AGRIVM L+    P+TAENFRALCTGE+GIGK GKPLHYKGS+FHR+IP FM
Sbjct:    6 KVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFM 69          
The following BLAST results are available for this feature:
BLAST of CX299763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
CP20A_ARATH1.465e-3880.65Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CP19D_ARATH5.762e-3570.87Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIB_DICDI4.422e-2778.26Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
CYP7_CAEEL9.221e-2576.92Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CYPH_MAIZE1.204e-2476.56Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CYPH_LUPLU1.204e-2476.56Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CYPH_SOLLC2.683e-2476.56Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
PPID_NEUCR5.977e-2465.3341 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
CYPH_BRANA2.966e-2371.64Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CP19A_ARATH3.874e-2373.44Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC07002B10SK NTLeaf1 Citrus clementina cDNA clone C07002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299763 ID=CX299763; Name=CX299763; organism=Citrus clementina; type=EST; length=353bp
CCAAAGTGAGTGACTGCGAAACGAGAAACAACGAAGTGATACATGGCTTC
GACAAAATTTCTTCCACTCACGATGCTATGGGCTATTGTCCTGTTTGCCA
CTTTCTCTTCAATTCAGGCGAAGAAATCGGATCAGAATTTGAAAGAAATC
ACAAACAAAGTTTACTTTGACGTTGAGATTGCTGGAAAACCTGCCGGACG
TATTGTAATGGGTCTCTTTGGAAAGGCAGTCCCTAAAACTGCAGAAAATT
TCCGAGCTTTGTGCACAGGGGAGAAAGGGATTGGCAAGAGCGGGAAGCCA
CTCCACTACAAGGGAAGTACGTTCCATAGGATTATTCCCAGCTTTATGCT
TCA
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