CX299766

Overview
NameCX299766
Unique NameCX299766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length365
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3373 contig Ccv1_Contig3373:303..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_LACSA (Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.306e-39
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            PS+FSV+SGEKIVFKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLN PGETYAVTLTEKGTYSFYC+PHQGAGMVG+VTVN
Sbjct:   16 PSTFSVASGEKIVFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAPGETYAVTLTEKGTYSFYCAPHQGAGMVGKVTVN 99          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS2_TOBAC (Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.216e-38
Identity = 72/84 (85.71%), Postives = 80/84 (95.24%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLNGPGETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:   16 PGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.164e-38
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P  FSV+SGE+IVFKNNAGFPHNVVFDEDEIPSGVD +KISMS EDLLN PGETY VTLTEKGTY FYCSPHQGAGMVG+VTVN
Sbjct:   85 PGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 168          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_RUMOB (Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.357e-38
Identity = 71/83 (85.54%), Postives = 79/83 (95.18%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            P SF+V++GEKIVFKNNAGFPHN+VFDEDE+P+GVD SKISMS EDLLN PGETYAVTL+EKGTYSFYCSPHQGAGMVG+VTV
Sbjct:   16 PGSFTVAAGEKIVFKNNAGFPHNIVFDEDEVPAGVDASKISMSEEDLLNAPGETYAVTLSEKGTYSFYCSPHQGAGMVGKVTV 98          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_MERPE (Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.222e-37
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P++FSV SGEKI FKNNAGFPHNVVFDEDEIPSGVD SKISM   DLLN PGETYAVTLTEKG+YSFYCSPHQGAGMVG+VTVN
Sbjct:   16 PNNFSVPSGEKITFKNNAGFPHNVVFDEDEIPSGVDASKISMDEADLLNAPGETYAVTLTEKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS1_TOBAC (Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.222e-37
Identity = 71/84 (84.52%), Postives = 80/84 (95.24%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVDVSKISMS E+ LNGPGETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:   16 PGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDVSKISMSEEEYLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_SOLCR (Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.596e-37
Identity = 71/84 (84.52%), Postives = 78/84 (92.86%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P +FS+S+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISM  EDLLN PGETY+VTL+EKGTYSFYCSPHQGAGMVG+VTVN
Sbjct:   16 PGNFSISAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMPEEDLLNAPGETYSVTLSEKGTYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_SAMNI (Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.555e-37
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            PS+FSV SGEKI FKNNAGFPHNVVFDEDE+PSGVD +KISMS +DLLN PGETY+VTLTE GTY FYCSPHQGAGMVG+VTVN
Sbjct:   16 PSNFSVPSGEKITFKNNAGFPHNVVFDEDEVPSGVDSAKISMSEDDLLNAPGETYSVTLTESGTYKFYCSPHQGAGMVGKVTVN 99          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_SOLLC (Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.351e-36
Identity = 70/84 (83.33%), Postives = 78/84 (92.86%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLN  GETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:   87 PGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 170          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_CUCPE (Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.765e-36
Identity = 70/84 (83.33%), Postives = 76/84 (90.48%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P+ FSV++GEKIVFKNNAGFPHNVVFDEDEIPSGVD  KISM+ EDLLN PGE Y V LTEKG+YSFYCSPHQGAGMVG+VTVN
Sbjct:   16 PNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDAGKISMNEEDLLNAPGEVYKVNLTEKGSYSFYCSPHQGAGMVGKVTVN 99          
The following BLAST results are available for this feature:
BLAST of CX299766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PLAS_LACSA1.306e-3990.48Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1[more]
PLAS2_TOBAC3.216e-3885.71Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_SPIOL7.164e-3886.90Plastocyanin, chloroplastic OS=Spinacia oleracea G... [more]
PLAS_RUMOB9.357e-3885.54Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV... [more]
PLAS_MERPE1.222e-3786.90Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 ... [more]
PLAS1_TOBAC1.222e-3784.52Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_SOLCR1.596e-3784.52Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1[more]
PLAS_SAMNI3.555e-3784.52Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1[more]
PLAS_SOLLC1.351e-3683.33Plastocyanin, chloroplastic OS=Solanum lycopersicu... [more]
PLAS_CUCPE1.765e-3683.33Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07002C01SK NTLeaf1 Citrus clementina cDNA clone C07002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299766 ID=CX299766; Name=CX299766; organism=Citrus clementina; type=EST; length=365bp
TCCAAGCTCTTTCTCTGTCAGCTCCGGTGAAAAGATTGTGTTCAAGAACA
ATGCTGGGTTCCCACACAACGTTGTTTTCGATGAAGATGAGATTCCGAGT
GGTGTTGATGTTTCAAAAATCTCCATGTCTACAGAAGACCTTCTCAATGG
TCCTGGAGAGACTTATGCTGTTACTCTGACTGAAAAAGGCACTTACTCTT
TCTACTGTTCCCCTCACCAAGGAGCTGGCATGGTTGGACAAGTGACTGTT
AATTAAGTTCACATTCAGACTTTGTTTGCCTCATCTCATTGGTTATCGTT
CTCTTCTTTTTGCATTTTATGAGTATCATACATATTTTCATTTGGTGAAA
AAAAAAAAAAAAAAA
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