CX299781

Overview
NameCX299781
Unique NameCX299781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6607 contig Ccv1_Contig6607:1304..1815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB1_ARATH (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.097e-54
Identity = 101/116 (87.07%), Postives = 110/116 (94.83%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            GVLHGA+SYLLQD+DGQIIEPHSISAGLDYPGVGPEHSF KD GRAEYY++TD+EALEAFKR SRLEGIIPALET+HALAYLEKLCPTL+DGT+VV+NFSGRGDKDVQT  KYL V
Sbjct:  355 GVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFFKDMGRAEYYSITDEEALEAFKRVSRLEGIIPALETSHALAYLEKLCPTLSDGTRVVLNFSGRGDKDVQTVAKYLDV 470          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRBP2_ARATH (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.097e-54
Identity = 102/116 (87.93%), Postives = 112/116 (96.55%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            GVLHGA+SYLLQD+DGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEY++VTD+EALEAFKR SRLEGIIPALET+HALA+LEKLCPTL DG +VV+NFSGRGDKDVQTAIKYL+V
Sbjct:  360 GVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDVGRAEYFSVTDEEALEAFKRVSRLEGIIPALETSHALAHLEKLCPTLPDGARVVLNFSGRGDKDVQTAIKYLEV 475          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.027e-52
Identity = 101/116 (87.07%), Postives = 109/116 (93.97%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            GVLHGA+SYLLQD+DGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEYY  TD+EALEAFKR SRLEGIIPALET+HALA+LEKLCPTL +GTKVV+N SGRGDKDV TAIK+LQV
Sbjct:  351 GVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDIGRAEYYCCTDEEALEAFKRLSRLEGIIPALETSHALAFLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKHLQV 466          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB2_MAIZE (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 6.657e-52
Identity = 99/116 (85.34%), Postives = 107/116 (92.24%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            GVLHG++SYLLQD+DGQ+IEPHSISAGLDYPGVGPEHSFLKD GRAEY +VTD EAL+AFKR SRLEGIIPALET+HALAYLEKLCPTLADG +VVVN SGRGDKDV TA KYL V
Sbjct:  328 GVLHGSMSYLLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLADGVRVVVNCSGRGDKDVHTASKYLDV 443          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB1_MAIZE (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 5.636e-51
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            GVLHG++SYLLQD+DGQ+IEPHSISAGLDYPGVGPEHSFLKD GRAEY +VTD EAL+AFKR SRLEGIIPALET+HALAYLEKLCPTL DG +VV+N SGRGDKDV TA KYL V
Sbjct:  274 GVLHGSMSYLLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLPDGVRVVLNCSGRGDKDVHTASKYLDV 389          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.697e-47
Identity = 90/114 (78.95%), Postives = 101/114 (88.60%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHGA+SYLLQDEDGQ+IE HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD+EAL AF+R SRLEGIIPALETAHA+AYLE LCP L    ++V+N SGRGDKDVQT  K+L
Sbjct:  297 GVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRAEYYSVTDEEALAAFQRLSRLEGIIPALETAHAIAYLETLCPQLDGSPRIVINCSGRGDKDVQTVAKFL 410          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_TRIEI (Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 4.937e-47
Identity = 89/115 (77.39%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHGA+SYLLQDE+GQIIEPHSISAGLDYPGVGPEHSFLKD GR EYY+VTD+EA+ AF+R S+LEGIIPALETAHA+AYLE LCP L+   ++V N SGRGDKDVQT  K+L+
Sbjct:  294 GVLHGAMSYLLQDEEGQIIEPHSISAGLDYPGVGPEHSFLKDSGRVEYYSVTDNEAVAAFQRLSQLEGIIPALETAHAIAYLETLCPQLSGSPRIVFNCSGRGDKDVQTVGKFLE 408          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 4.937e-47
Identity = 88/114 (77.19%), Postives = 101/114 (88.60%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHGA+SYLLQDEDGQ+IE HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD++AL AF+R SRLEGIIPALETAHA+AYLE LCP L    ++++N SGRGDKDVQT  K+L
Sbjct:  297 GVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRAEYYSVTDEQALAAFQRLSRLEGIIPALETAHAIAYLETLCPQLDGSPRIIINCSGRGDKDVQTVAKFL 410          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNY3 (Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803) GN=trpB PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.876e-46
Identity = 87/116 (75.00%), Postives = 101/116 (87.07%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            GVLHGA+SYLLQD++GQ+ E HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD EA+ A +R S+LEGIIPALETAHA AYLE LCP L +G ++V+N SGRGDKDVQT  KYLQ+
Sbjct:  295 GVLHGAMSYLLQDKEGQVTEAHSISAGLDYPGVGPEHSYLKDAGRAEYYSVTDQEAITALQRLSQLEGIIPALETAHAFAYLETLCPQLKNGERIVINCSGRGDKDVQTVAKYLQM 410          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.293e-44
Identity = 85/114 (74.56%), Postives = 98/114 (85.96%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHGA+SYLLQDEDGQ+IE HSISAGLDYPGVGPEHS+LKD  RAEYY+VTD +AL+ F++ SRLEGIIPALET+HA+AYLE LCP L    ++V+N SGRGDKDVQT  K L
Sbjct:  294 GVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDIRRAEYYSVTDKQALDGFQQLSRLEGIIPALETSHAIAYLETLCPQLNGSPRIVINCSGRGDKDVQTVAKVL 407          
The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
TRPB1_ARATH1.097e-5487.07Tryptophan synthase beta chain 1, chloroplastic OS... [more]
TRBP2_ARATH1.097e-5487.93Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB_CAMAC1.027e-5287.07Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB2_MAIZE6.657e-5285.34Tryptophan synthase beta chain 2, chloroplastic (F... [more]
TRPB1_MAIZE5.636e-5183.62Tryptophan synthase beta chain 1 (Fragment) OS=Zea... [more]
TRPB2_ANASP1.697e-4778.95Tryptophan synthase beta chain 2 OS=Anabaena sp. (... [more]
TRPB_TRIEI4.937e-4777.39Tryptophan synthase beta chain OS=Trichodesmium er... [more]
TRPB_ANAVT4.937e-4777.19Tryptophan synthase beta chain OS=Anabaena variabi... [more]
TRPB_SYNY31.876e-4675.00Tryptophan synthase beta chain OS=Synechocystis sp... [more]
TRPB1_ANASP2.293e-4474.56Tryptophan synthase beta chain 1 OS=Anabaena sp. (... [more]

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Properties
Property NameValue
Genbank descriptionC07002D05SK NTLeaf1 Citrus clementina cDNA clone C07002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bp
GGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATGGGCA
AATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGAGTTG
GACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTATAAT
GTCACAGATGATGAAGCATTGGAAGCTTTCAAGAGGTCATCACGGCTAGA
GGGTATAATCCCAGCTTTGGAGACTGCTCATGCATTGGCTTATTTGGAGA
AGCTATGCCCAACTCTTGCTGATGGTACTAAGGTTGTGGTTAACTTCAGT
GGCAGAGGTGACAAGGATGTCCAGACAGCGATCAAATATTTGCAAGTTTG
ATGGTAATGCTTGTAACCCACAATATATGATTCATTTACTGAAAACAAAT
AAATGGGTTGCTTGAGCTTCTGTTTTTGAATTTTGTATCATTAGTTATTT
CAGAGATGTGAGAACCATCTTATGTAATTTGAGTTAAAACTTTATAAAAA
AAAAAAAAAAAA
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