CX299792

Overview
NameCX299792
Unique NameCX299792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 2.496e-38
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 3
Query:  195 DSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            D   L   R EAV W+L+VNAHYGFSTL A+LAI YLD+F+ S+  Q DKPWM+QL++V CLSLAAKVEETQVPLLLD QVE  KYVFE K IQRMELL+LSTLEWK
Sbjct:   79 DDVYLSTDRKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQRDKPWMLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWK 185          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD33_ARATH (Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.051e-36
Identity = 70/107 (65.42%), Postives = 87/107 (81.31%), Query Frame = 3
Query:  195 DSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            D + LV+ R +A++W+ KV +HYGF++LTA+LA+NY DRF+ S  FQ DKPWM QL A+ CLSLAAKVEE +VP LLD QVE A+YVFE K IQRMELLVLSTL+W+
Sbjct:   78 DDEFLVLCREKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWR 184          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD32_ARATH (Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.205e-36
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 3
Query:  207 LVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            LV  R EA++WVL+V +HYGF++LTAILA+NY DRF+ S   Q DKPWM QL+AV  LSLAAKVEE QVPLLLDLQVE A+Y+FE K IQRMELL+LSTL+W+
Sbjct:   92 LVSCRKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWR 194          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.268e-30
Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = 3
Query:  195 DSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            D D+ +  R +A++W+ KV+++Y F+ LTA LA+NYLDRFL  +     K WM QLLAV CLSLAAK+EET VP  LDLQV   +YVFE K IQRMELLVLSTL+W+
Sbjct:   95 DGDLDLRVRMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWR 201          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.373e-28
Identity = 60/105 (57.14%), Postives = 80/105 (76.19%), Query Frame = 3
Query:  201 DVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            D+ +  R++A++W+LKV AHY F  L   L++NYLDRFL S+    DK W  QLLAV+CLSLA+K+EET VP ++DLQVE  K+VFE K I+RMELLV++TL W+
Sbjct:   91 DLDLSVRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWR 195          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD22_ORYSJ (Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.518e-27
Identity = 56/99 (56.57%), Postives = 78/99 (78.79%), Query Frame = 3
Query:  219 RSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            R +A++W+ KV+++Y F  L+  LA+NYLDRFL SF+   D+ WM QLL+V+CLSLA K+EET VPL +DLQV  A+YVFE + I+RMEL+V+ TL+W+
Sbjct:   95 RKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWR 193          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 3.382e-27
Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:  216 ARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            AR ++V W+LKV A+Y F  LTA LA+NY+DRFL +        W +QLLAV CLSLAAK+EE  VP L D QV G KY+FE K I+RMELLVLS L+W+
Sbjct:   81 AREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWR 180          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD21_ORYSJ (Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 7.533e-27
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 3
Query:  216 ARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            AR+E+V W+LKV  + GF  LTA LA+NY+DRFL   H    + W +QLLAV CLSLAAK+EET VP LLDLQVE ++YVFE + I RME L+L+ L W+
Sbjct:   81 ARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRHLPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQVECSRYVFEPRTICRMEFLILTALNWR 180          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD31_ORYSJ (Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYCD3-1 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 8.329e-26
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 3
Query:  207 LVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            LV  RS+A++W+ KV+  Y F  LTA+L++NYLDRFL  F    ++  M QLLAV  LSLAAK+EET VP  LDLQV  AKYVFET+ I+RMEL VL+ L+W+
Sbjct:   86 LVAVRSDAIDWIWKVHELYKFGPLTAVLSVNYLDRFLSVFDLPQEEACMTQLLAVASLSLAAKMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWR 188          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD23_ORYSJ (Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.329e-26
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 3
Query:  219 RSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQI--DKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            R  A++W+ KV A+Y F  L A LA+NYLDRFL S  F +  D PWM QLL V CLSLAAK+EET  P  LDLQV   +YVF+ + I RME++VL+TL+W+
Sbjct:  104 RIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAAKMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWR 204          
The following BLAST results are available for this feature:
BLAST of CX299792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CCD31_ARATH2.496e-3871.96Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=... [more]
CCD33_ARATH3.051e-3665.42Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=... [more]
CCD32_ARATH5.205e-3669.90Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=... [more]
CCD41_ORYSJ4.268e-3059.81Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD21_ARATH1.373e-2857.14Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=... [more]
CCD22_ORYSJ1.518e-2756.57Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD11_ARATH3.382e-2759.00Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=... [more]
CCD21_ORYSJ7.533e-2759.00Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD31_ORYSJ8.329e-2658.25Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD23_ORYSJ8.329e-2656.44Putative cyclin-D2-3 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC07002E04SK NTLeaf1 Citrus clementina cDNA clone C07002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299792 ID=CX299792; Name=CX299792; organism=Citrus clementina; type=EST; length=516bp
GTGAAGAAGAAGAGTTAGAAGATGAGGTTATTGACCAAGAAGACGATGAA
TGTAGCCAAAACAAAAACCCAGCTTGTTTGTTTTCACTTCTTTTGTTAGA
ACAAGACTTGTTCTGGGAAGATGAAGAGCTCTTGTCTCTCTTCTCCAAAG
AAGAGCAACAGCTTTTAAAGCAAGAAACACAAACCCATTATAAAGATTCC
GATGTTCTTGTTGTTGCTAGGAGTGAGGCTGTTGAGTGGGTGCTCAAAGT
TAATGCTCATTATGGGTTCTCTACTCTCACTGCAATACTGGCTATTAACT
ATCTGGATAGGTTCCTCCGTAGCTTCCATTTTCAAATAGATAAGCCTTGG
ATGATTCAGCTTTTGGCTGTCACTTGTCTCTCCCTGGCTGCTAAAGTTGA
AGAAACCCAAGTGCCCCTTCTCTTAGACCTCCAAGTTGAGGGGGCAAAAT
ATGTTTTTGAGACCAAAGCCATACAAAGAATGGAGCTTTTGGTGCTCTCA
ACACTTGAATGGAAGA
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