CX299795

Overview
NameCX299795
Unique NameCX299795
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length507
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11330 contig Ccv1_Contig11330:337..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299795 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.967e-20
Identity = 61/155 (39.35%), Postives = 80/155 (51.61%), Query Frame = 1
Query:    1 TAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAXKWVASHVDGNGPEDWLNRYADFE-RVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSEPT-DVKIRA---GTERFWRFTCPSTSGLDDPWVNP 450
            +A S  Y  +   LV+   ++ VSVDYRR+PEH  P AY+D W+A  WV S V       WL    D    V+ +GDS+G NIAH++A+R   E   G  V+G +L+HP F G E   SE T D K        + +WR   P     D P  NP
Sbjct:  121 SANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNE---GVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNP 265          
BLAST of CX299795 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.070e-17
Identity = 58/155 (37.42%), Postives = 78/155 (50.32%), Query Frame = 1
Query:    1 TAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAXKWVASHVDGNGPEDWLNRYADFE-RVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSE-PTDVK---IRAGTERFWRFTCPSTSGLDDPWVNP 450
            +A S  Y +     V  +  + VSV+YRRAPEH  P AY+D W A KWV S       + ++    D + RVF SGDS+G NIAHH+A+R   E   G  V G +L++  F G E   SE   D K        + +W+   P  +  D P  NP
Sbjct:  128 SASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADE---GVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNP 272          
BLAST of CX299795 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.010e-17
Identity = 56/156 (35.90%), Postives = 79/156 (50.64%), Query Frame = 1
Query:    1 TAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAXKWVASHVDGNGPEDWLNRYADFE-RVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSEPT-----DVKIRAGTERFWRFTCPSTSGLDDPWVNP 450
            +A S  Y      LV     + VSV+YRRAPE+P P AY+D W A  WV S         WL    D +  +F +GDS+G NIAH++A+R G     G +V+G +L++P F G E   SE +      V +R   + +W+   P     + P  NP
Sbjct:  121 SANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNS-------RSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVR-DRDWYWKAFLPEGEDREHPACNP 265          
BLAST of CX299795 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 61/174 (35.06%), Postives = 83/174 (47.70%), Query Frame = 1
Query:    1 TAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAXKWVASHVDGNGPEDWLNRYADFE-RVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSEPT-----DVKIRAGTERFWRFTCPSTSGLDDPWVNPCAD-SSSLASLGCARVLV 501
            +A S  Y      LV     + VSV+YRRAPE+  P AY+D W   KWV S         WL    D + R+F +GDS+G NI H++A+R     ID   V+G +L++P F G E   SE        V +R   + +WR   P     + P  +P    S SL  L   + LV
Sbjct:  119 SANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS-------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRID---VLGNILLNPMFGGTERTESEKRLDGKYFVTVR-DRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLV 281          
The following BLAST results are available for this feature:
BLAST of CX299795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L2_ARATH2.967e-2039.35Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ3.070e-1737.42Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L1_ARATH4.010e-1735.90Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L3_ARATH5.790e-1635.06Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC07002E07SK NTLeaf1 Citrus clementina cDNA clone C07002E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299795 ID=CX299795; Name=CX299795; organism=Citrus clementina; type=EST; length=507bp
ACTGCTTTTTCACCAACTTACCATAATTACCTCAACGACTTGGTCTCTGA
AGCTAACATCATCGCAGTCTCGGTCGACTACCGAAGAGCCCCAGAGCATC
CCCTTCCTATCGCTTATGAAGATTCATGGGACGCANTCAAATGGGTTGCT
TCCCATGTTGACGGAAATGGCCCCGAAGATTGGCTCAACCGTTATGCTGA
TTTTGAGCGAGTGTTTTACTCTGGGGACAGCGCTGGTGCTAATATTGCTC
ATCACATGGCAATAAGAAACGGTGGAGAAATTATCGACGGCTTTAATGTT
GTTGGTATTGTCTTGATTCATCCATACTTTTGGGGTGTTGAACCTGTTGG
TTCCGAGCCTACTGATGTTAAAATAAGAGCTGGAACGGAGAGATTTTGGC
GATTTACTTGTCCAAGCACAAGCGGGCTCGATGATCCGTGGGTTAATCCG
TGTGCCGACAGTTCGAGCCTCGCGAGCCTGGGGTGCGCCAGGGTGCTGGT
GTTTGCT
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