CX299803

Overview
NameCX299803
Unique NameCX299803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299803 vs. ExPASy Swiss-Prot
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.731e-36
Identity = 75/105 (71.43%), Postives = 85/105 (80.95%), Query Frame = 3
Query:  195 DSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLE 509
            D   L   R EAV W+L+VNAHYGFSTL A+LAI YLD+F+ S+  Q DKPWM+QL++V CLSLAAKVEETQVPLLLD QVE  KYVFE K IQRMELL+LSTLE
Sbjct:   79 DDVYLSTDRKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQRDKPWMLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILSTLE 183          
BLAST of CX299803 vs. ExPASy Swiss-Prot
Match: CCD33_ARATH (Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 3
Query:  195 DSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLE 509
            D + LV+ R +A++W+ KV +HYGF++LTA+LA+NY DRF+ S  FQ DKPWM QL A+ CLSLAAKVEE +VP LLD QVE A+YVFE K IQRMELLVLSTL+
Sbjct:   78 DDEFLVLCREKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLD 182          
BLAST of CX299803 vs. ExPASy Swiss-Prot
Match: CCD32_ARATH (Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.620e-34
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 3
Query:  207 LVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLE 509
            LV  R EA++WVL+V +HYGF++LTAILA+NY DRF+ S   Q DKPWM QL+AV  LSLAAKVEE QVPLLLDLQVE A+Y+FE K IQRMELL+LSTL+
Sbjct:   92 LVSCRKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQ 192          
BLAST of CX299803 vs. ExPASy Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.329e-28
Identity = 63/105 (60.00%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  195 DSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLE 509
            D D+ +  R +A++W+ KV+++Y F+ LTA LA+NYLDRFL  +     K WM QLLAV CLSLAAK+EET VP  LDLQV   +YVFE K IQRMELLVLSTL+
Sbjct:   95 DGDLDLRVRMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLK 199          
BLAST of CX299803 vs. ExPASy Swiss-Prot
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 4.274e-27
Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = 3
Query:  201 DVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTL 506
            D+ +  R++A++W+LKV AHY F  L   L++NYLDRFL S+    DK W  QLLAV+CLSLA+K+EET VP ++DLQVE  K+VFE K I+RMELLV++TL
Sbjct:   91 DLDLSVRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTL 192          
BLAST of CX299803 vs. ExPASy Swiss-Prot
Match: CCD22_ORYSJ (Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.726e-26
Identity = 55/97 (56.70%), Postives = 76/97 (78.35%), Query Frame = 3
Query:  219 RSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLE 509
            R +A++W+ KV+++Y F  L+  LA+NYLDRFL SF+   D+ WM QLL+V+CLSLA K+EET VPL +DLQV  A+YVFE + I+RMEL+V+ TL+
Sbjct:   95 RKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLK 191          
BLAST of CX299803 vs. ExPASy Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.053e-25
Identity = 58/98 (59.18%), Postives = 70/98 (71.43%), Query Frame = 3
Query:  216 ARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLE 509
            AR ++V W+LKV A+Y F  LTA LA+NY+DRFL +        W +QLLAV CLSLAAK+EE  VP L D QV G KY+FE K I+RMELLVLS L+
Sbjct:   81 AREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLD 178          
BLAST of CX299803 vs. ExPASy Swiss-Prot
Match: CCD21_ORYSJ (Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.345e-25
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 3
Query:  216 ARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTL 506
            AR+E+V W+LKV  + GF  LTA LA+NY+DRFL   H    + W +QLLAV CLSLAAK+EET VP LLDLQVE ++YVFE + I RME L+L+ L
Sbjct:   81 ARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRHLPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQVECSRYVFEPRTICRMEFLILTAL 177          
BLAST of CX299803 vs. ExPASy Swiss-Prot
Match: CCD31_ORYSJ (Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYCD3-1 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.593e-24
Identity = 59/101 (58.42%), Postives = 74/101 (73.27%), Query Frame = 3
Query:  207 LVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLE 509
            LV  RS+A++W+ KV+  Y F  LTA+L++NYLDRFL  F    ++  M QLLAV  LSLAAK+EET VP  LDLQV  AKYVFET+ I+RMEL VL+ L+
Sbjct:   86 LVAVRSDAIDWIWKVHELYKFGPLTAVLSVNYLDRFLSVFDLPQEEACMTQLLAVASLSLAAKMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALK 186          
BLAST of CX299803 vs. ExPASy Swiss-Prot
Match: CCD23_ORYSJ (Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.593e-24
Identity = 56/99 (56.57%), Postives = 70/99 (70.71%), Query Frame = 3
Query:  219 RSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQI--DKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLE 509
            R  A++W+ KV A+Y F  L A LA+NYLDRFL S  F +  D PWM QLL V CLSLAAK+EET  P  LDLQV   +YVF+ + I RME++VL+TL+
Sbjct:  104 RIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAAKMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLK 202          
The following BLAST results are available for this feature:
BLAST of CX299803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CCD31_ARATH1.731e-3671.43Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=... [more]
CCD33_ARATH9.499e-3565.71Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=... [more]
CCD32_ARATH1.620e-3470.30Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=... [more]
CCD41_ORYSJ1.329e-2860.00Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD21_ARATH4.274e-2757.84Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=... [more]
CCD22_ORYSJ4.726e-2656.70Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD11_ARATH1.053e-2559.18Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=... [more]
CCD21_ORYSJ2.345e-2559.79Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD31_ORYSJ2.593e-2458.42Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD23_ORYSJ2.593e-2456.57Putative cyclin-D2-3 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC07002F04SK NTLeaf1 Citrus clementina cDNA clone C07002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299803 ID=CX299803; Name=CX299803; organism=Citrus clementina; type=EST; length=509bp
GTGAAGAAGAAGAGTTAGAAGATGAGGTTATTGACCAAGAAGACGATGAA
TGTAGCCAAAACAAAAACCCAGCTTGTTTGTTTTCACTTCTTTTGTTAGA
ACAAGACTTGTTCTGGGAAGATGAAGAGCTCTTGTCTCTCTTCTCCAAAG
AAGAGCAACAGCTTTTAAAGCAAGAAACACAAACCCATTATAAAGATTCC
GATGTTCTTGTTGTTGCTAGGAGTGAGGCTGTTGAGTGGGTGCTCAAAGT
TAATGCTCATTATGGGTTCTCTACTCTCACTGCAATACTGGCTATTAACT
ATCTGGATAGGTTCCTCCGTAGCTTCCATTTTCAAATAGATAAGCCTTGG
ATGATTCAGCTTTTGGCTGTCACTTGTCTCTCCCTGGCTGCTAAAGTTGA
AGAAACCCAAGTGCCCCTTCTCTTAGACCTCCAAGTTGAGGGGGCAAAAT
ATGTTTTTGAGACCAAAGCCATACAAAGAATGGAGCTTTTGGTGCTCTCA
ACACTTGAA
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