CX299814

Overview
NameCX299814
Unique NameCX299814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299814 vs. ExPASy Swiss-Prot
Match: GDL34_ARATH (GDSL esterase/lipase At2g04570 OS=Arabidopsis thaliana GN=At2g04570 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.802e-28
Identity = 54/84 (64.29%), Postives = 67/84 (79.76%), Query Frame = 2
Query:    8 LVFSNPYFAFMQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAFHPTQKTNRIIADHVVKSALAKFL 259
            LVFSNPY  FM+II+ P+ +GF+V   ACCATGMFEMGY C R++ F+CTNADKYVFWD+FHPTQKTN I+A+ ++ S    FL
Sbjct:  267 LVFSNPYEPFMRIIKNPSSFGFEVVGAACCATGMFEMGYGCQRNNPFTCTNADKYVFWDSFHPTQKTNHIMANALMNSTFPHFL 350          
BLAST of CX299814 vs. ExPASy Swiss-Prot
Match: GDL48_ARATH (GDSL esterase/lipase At2g42990 OS=Arabidopsis thaliana GN=At2g42990 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.631e-23
Identity = 40/79 (50.63%), Postives = 61/79 (77.22%), Query Frame = 2
Query:    2 IKLVFSNPYFAFMQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAFHPTQKTNRIIADHVVK 238
            IK+ F+NPY     I+ +P LYG +++  ACC TG+FEMG+ C +D+  +C++A+K+VFWDAFHPT++TN+I++DH  K
Sbjct:  265 IKIYFANPYDIMWDIVTKPNLYGLEISSSACCGTGLFEMGFLCGQDNPLTCSDANKFVFWDAFHPTERTNQIVSDHFFK 343          
BLAST of CX299814 vs. ExPASy Swiss-Prot
Match: GDL66_ARATH (GDSL esterase/lipase At4g26790 OS=Arabidopsis thaliana GN=At4g26790 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.660e-23
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 2
Query:    2 IKLVFSNPYFAFMQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAFHPTQKTNRIIADHVVKSALAKF 256
            I+LVFSNPY    +II  P  +GF+    ACC TG +EM Y C + + F+C++A KYVFWD+FHPT+KTN I+A+HV+K  L++F
Sbjct:  266 IQLVFSNPYDLVSEIIYHPEAFGFENVRSACCGTGYYEMSYLCDKMNPFTCSDASKYVFWDSFHPTEKTNAIVANHVLKYDLSRF 350          
BLAST of CX299814 vs. ExPASy Swiss-Prot
Match: GDL78_ARATH (GDSL esterase/lipase At5g22810 OS=Arabidopsis thaliana GN=At5g22810 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 2
Query:    2 IKLVFSNPYFAFMQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAFHPTQKTNRIIADHVVKSALA 250
            + LV  + Y     +  RP+ +GF     ACC TG+ E    C   S+ +C NA +YVFWD FHPT+  N+I+AD+++ S ++
Sbjct:  260 LNLVVFDIYQPLYDLATRPSEFGFAEARRACCGTGLLETSILCNPKSVGTCNNATEYVFWDGFHPTEAANKILADNLLVSGIS 342          
BLAST of CX299814 vs. ExPASy Swiss-Prot
Match: GDL56_ARATH (GDSL esterase/lipase At3g43570 OS=Arabidopsis thaliana GN=At3g43570 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 26/82 (31.71%), Postives = 51/82 (62.20%), Query Frame = 2
Query:    8 LVFSNPYFAFMQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAFHPTQKTNRIIADHVVKSALAK 253
            +++ N Y     +I+ P  YGF+V +  CC  G+  + Y C   + F+C+N+  Y+FWD++HP+++  ++I D+++   L+K
Sbjct:  237 ILYINVYDTLFDMIQHPKKYGFEVADRGCCGKGLLTISYLCNSLNQFTCSNSSAYIFWDSYHPSKRAYQVIVDNLLDKYLSK 318          
BLAST of CX299814 vs. ExPASy Swiss-Prot
Match: GDL26_ARATH (GDSL esterase/lipase At1g59030/At1g59406 OS=Arabidopsis thaliana GN=At1g59030 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.792e-13
Identity = 26/82 (31.71%), Postives = 51/82 (62.20%), Query Frame = 2
Query:    8 LVFSNPYFAFMQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAFHPTQKTNRIIADHVVKSALAK 253
            +++ N Y     +I+ P  YGF+V +  CC  G+  + Y C   + F+C+N+  Y+FWD++HP+++  ++I D+++   L+K
Sbjct:  266 ILYINVYDTLFDMIQHPKKYGFEVADRGCCGKGLLAISYLCNSLNPFTCSNSSAYIFWDSYHPSERAYQVIVDNLLDKYLSK 347          
BLAST of CX299814 vs. ExPASy Swiss-Prot
Match: GDL25_ARATH (GDSL esterase/lipase At1g58725 OS=Arabidopsis thaliana GN=At1g58725 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.792e-13
Identity = 26/82 (31.71%), Postives = 51/82 (62.20%), Query Frame = 2
Query:    8 LVFSNPYFAFMQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAFHPTQKTNRIIADHVVKSALAK 253
            +++ N Y     +I+ P  YGF+V +  CC  G+  + Y C   + F+C+N+  Y+FWD++HP+++  ++I D+++   L+K
Sbjct:  266 ILYINVYDTLFDMIQHPKKYGFEVADRGCCGKGLLAISYLCNSLNPFTCSNSSAYIFWDSYHPSERAYQVIVDNLLDKYLSK 347          
BLAST of CX299814 vs. ExPASy Swiss-Prot
Match: EXL2_ARATH (GDSL esterase/lipase EXL2 OS=Arabidopsis thaliana GN=EXL2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.792e-13
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 2
Query:    8 LVFSNPYFAFMQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAFHPTQKTNRIIA 223
            +++ + Y + + II  P  YGF V +  CC TG+ E+   C   +   C N D+YVFWD+FHPT+KT RI+A
Sbjct:  300 IIYVDIYDSLLDIILDPRQYGFKVVDKGCCGTGLIEVALLCNNFAADVCPNRDEYVFWDSFHPTEKTYRIMA 371          
BLAST of CX299814 vs. ExPASy Swiss-Prot
Match: GDL72_ARATH (GDSL esterase/lipase At5g03810 OS=Arabidopsis thaliana GN=At5g03810 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 2
Query:    2 IKLVFSNPYFAFMQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAFHPTQKTNRIIADHVV 235
            +KLV  + Y   + ++  P  YGF  +  ACC TG  E  + C   S+ +C+NA  YVFWD FHP++  NR+IA++++
Sbjct:  268 LKLVVFDIYNPLLNMVINPVEYGFFESRRACCGTGTMETSFLCNALSVGTCSNATNYVFWDGFHPSEAANRVIANNLL 345          
BLAST of CX299814 vs. ExPASy Swiss-Prot
Match: GDL4_ARATH (GDSL esterase/lipase At1g20120 OS=Arabidopsis thaliana GN=At1g20120 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13
Identity = 28/83 (33.73%), Postives = 50/83 (60.24%), Query Frame = 2
Query:    8 LVFSNPYFAFMQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAFHPTQKTNRIIADHVVKSALAKF 256
            LV+ + Y +F  +I+ P  YGFD  +  CC TG+ E+G  C + +   C N   ++FWD++HPT++  +I++   V++ +  F
Sbjct:  317 LVYIDIYSSFNDMIQNPKKYGFDEIDRGCCGTGLLELGPLCNKYTSLLCKNVSSFMFWDSYHPTERAYKILSQKFVENDMGPF 399          
The following BLAST results are available for this feature:
BLAST of CX299814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GDL34_ARATH1.802e-2864.29GDSL esterase/lipase At2g04570 OS=Arabidopsis thal... [more]
GDL48_ARATH6.631e-2350.63GDSL esterase/lipase At2g42990 OS=Arabidopsis thal... [more]
GDL66_ARATH8.660e-2352.94GDSL esterase/lipase At4g26790 OS=Arabidopsis thal... [more]
GDL78_ARATH2.138e-1338.55GDSL esterase/lipase At5g22810 OS=Arabidopsis thal... [more]
GDL56_ARATH2.138e-1331.71GDSL esterase/lipase At3g43570 OS=Arabidopsis thal... [more]
GDL26_ARATH2.792e-1331.71GDSL esterase/lipase At1g59030/At1g59406 OS=Arabid... [more]
GDL25_ARATH2.792e-1331.71GDSL esterase/lipase At1g58725 OS=Arabidopsis thal... [more]
EXL2_ARATH2.792e-1343.06GDSL esterase/lipase EXL2 OS=Arabidopsis thaliana ... [more]
GDL72_ARATH6.221e-1339.74GDSL esterase/lipase At5g03810 OS=Arabidopsis thal... [more]
GDL4_ARATH6.221e-1333.73GDSL esterase/lipase At1g20120 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07002G04SK NTLeaf1 Citrus clementina cDNA clone C07002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299814 ID=CX299814; Name=CX299814; organism=Citrus clementina; type=EST; length=377bp
AATCAAACTTGTGTTTTCGAATCCTTATTTTGCTTTCATGCAGATCATAC
GAAGACCTGCTCTTTATGGATTCGACGTTACAGAAGTGGCATGCTGCGCA
ACGGGAATGTTCGAAATGGGCTACGCATGCGCCCGTGACAGTATGTTTTC
ATGCACAAATGCTGATAAATATGTCTTTTGGGATGCCTTTCATCCGACGC
AGAAAACCAATCGCATCATCGCTGATCATGTGGTCAAGTCTGCTCTTGCG
AAGTTTCTTTGATAAAACGGCACTGCATGTATGCCTCGCACAGGCCTGTG
TTCTCTCTACTGTATGCATAGTGACTTTGGTTACCCAAATATATGAAATT
ATATTAATTAAAAAAAAAAAAAAAAAA
back to top