CX299816

Overview
NameCX299816
Unique NameCX299816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig614 contig Ccv1_Contig614:129..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 6.338e-63
Identity = 116/141 (82.27%), Postives = 121/141 (85.82%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR+                AFDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+ H+ADPVANNAWAYATNFVPGK
Sbjct:  125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.409e-62
Identity = 116/141 (82.27%), Postives = 120/141 (85.11%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDP  FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+ H+ADPVANNAWAYATNFVPGK
Sbjct:  123 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.409e-62
Identity = 116/141 (82.27%), Postives = 120/141 (85.11%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDP  FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+ H+ADPVANNAWAYATNFVPGK
Sbjct:  123 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 5.366e-62
Identity = 115/141 (81.56%), Postives = 120/141 (85.11%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLY H+ADPVANNAWA+ATNFVPGK
Sbjct:  125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 7.008e-62
Identity = 115/141 (81.56%), Postives = 119/141 (84.40%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+                AFDPLGLADDP   AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLY H+ADPVANNAWAYATNFVPGK
Sbjct:   10 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 9.152e-62
Identity = 115/141 (81.56%), Postives = 119/141 (84.40%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYR+                AFDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL  HI DPVANNAWAYATNFVPGK
Sbjct:  125 FGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.039e-61
Identity = 116/141 (82.27%), Postives = 119/141 (84.40%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL  HIADPVANNAWAYATNFVPGK
Sbjct:   97 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.039e-61
Identity = 114/141 (80.85%), Postives = 118/141 (83.69%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAGAQIFSEGGLDY GNPNLIHAQSILAIWACQVVLMG +EGYR+                AFDPLGLADDP   AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLY H+ADPVANNAWAYATNFVPGK
Sbjct:  126 FGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 4.542e-61
Identity = 113/141 (80.14%), Postives = 120/141 (85.11%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDP  FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+NLY H+ADPVANNAWA+ATNFVPG+
Sbjct:  125 FGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 5.932e-61
Identity = 112/141 (79.43%), Postives = 119/141 (84.40%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNPNLIHAQSILA+WA QVVLMG +EGYR+                AFDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+ H+ADPVANNAWAYATNFVPGK
Sbjct:  125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of CX299816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB21_GOSHI6.338e-6382.27Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_ORYSJ2.409e-6282.27Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.409e-6282.27Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP5.366e-6281.56Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB22_PINSY7.008e-6281.56Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB24_SOLLC9.152e-6281.56Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB25_SOLLC2.039e-6182.27Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_PINTH2.039e-6180.85Chlorophyll a-b binding protein type I, chloroplas... [more]
CB215_PEA4.542e-6180.14Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_TOBAC5.932e-6179.43Chlorophyll a-b binding protein 36, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07002G07SK NTLeaf1 Citrus clementina cDNA clone C07002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299816 ID=CX299816; Name=CX299816; organism=Citrus clementina; type=EST; length=570bp
CGGGTTCGGCGAAGCATTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTG
AAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGC
ATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTCATGGGTTTTGTTGAAGG
ATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACC
CTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCNATCAATTT
GCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTC
CATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTG
AGAACCTCTACNACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCT
TATGCCACTAACTTTGTTCCCGGAAAGTGAAGAAACTCATGACTTGATGG
TGTCTGTTTCATCTGTAACATTATTCTATCTATCGTATGTGCTTTTGTGG
AAAACTCTGTCATGGACTTACTAGTAGCTCTGTAATGTTACCATTAGAAA
TGCTATGCTCCTGATCTTTT
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