CX299821

Overview
NameCX299821
Unique NameCX299821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig278 contig Ccv1_Contig278:540..1076. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_TOBAC (Proliferating cell nuclear antigen OS=Nicotiana tabacum GN=PCNA PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.708e-46
Identity = 91/97 (93.81%), Postives = 96/97 (98.97%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKP 315
            KFSTRGDIGTANIV RQNTTVDKPEEAT+IEM+EPVSLTFALRY+NSFT+ATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE+ETKP
Sbjct:  168 KFSTRGDIGTANIVCRQNTTVDKPEEATVIEMNEPVSLTFALRYLNSFTKATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEEETKP 264          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_SOYBN (Proliferating cell nuclear antigen (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.031e-46
Identity = 89/99 (89.90%), Postives = 98/99 (98.99%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQV 321
            KFST+GDIGTANIV RQNT+VDKPEEAT+IEM+EPVSLTFALRYMNSFT+ATPLSNTVTISLS+ELPVVVEYKIAEMGY+RFYLAPKIEEDE++TKPQV
Sbjct:  138 KFSTKGDIGTANIVCRQNTSVDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSNTVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDEEDTKPQV 236          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA1_DAUCA (Proliferating cell nuclear antigen OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 6.799e-45
Identity = 89/97 (91.75%), Postives = 96/97 (98.97%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKP 315
            KFSTRGDIGTANIV RQNTTVDKPEEAT+IEM+EPVSLTFALRYMNSFT+A+PLS+TVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE+EDE+KP
Sbjct:  168 KFSTRGDIGTANIVCRQNTTVDKPEEATVIEMNEPVSLTFALRYMNSFTKASPLSSTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEEEDESKP 264          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_PEA (Proliferating cell nuclear antigen OS=Pisum sativum GN=PCNA PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.282e-43
Identity = 85/98 (86.73%), Postives = 96/98 (97.96%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQ 318
            KFST+GDIG+ANIV RQNTTVDKPEEAT+IEM+EPV+L FALRYMNSFT+ATPLS++VTISLS+ELPVVVEYKIAEMGY+RFYLAPKIEEDE+ETKPQ
Sbjct:  168 KFSTKGDIGSANIVCRQNTTVDKPEEATVIEMNEPVALQFALRYMNSFTKATPLSSSVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEEDEEETKPQ 265          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_CATRO (Proliferating cell nuclear antigen OS=Catharanthus roseus PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.363e-43
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 306
            KFSTRGDIGTANIV RQNTTVDKP+EATIIEM+EPVSLTFALRY+NSFT+ATPLSN VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED++E
Sbjct:  168 KFSTRGDIGTANIVCRQNTTVDKPDEATIIEMNEPVSLTFALRYLNSFTKATPLSNNVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDDEE 261          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_POPNI (Proliferating cell nuclear antigen OS=Populus nigra GN=PCNA PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.851e-42
Identity = 83/94 (88.30%), Postives = 92/94 (97.87%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 306
            KFSTRGDIGTANIVLRQNTTVDKPE+AT+IEM+EPVS+TFALRYMNSFT+ATPLSNTVTIS+S +LPVVVEYKIAEMGY+RFYLAPK+EEDE E
Sbjct:  168 KFSTRGDIGTANIVLRQNTTVDKPEDATVIEMNEPVSMTFALRYMNSFTKATPLSNTVTISMSPDLPVVVEYKIAEMGYVRFYLAPKMEEDEPE 261          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA2_ARATH (Proliferating cell nuclear antigen 2 OS=Arabidopsis thaliana GN=At2g29570 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.036e-42
Identity = 85/98 (86.73%), Postives = 94/98 (95.92%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQ 318
            KFST GDIGTANIVLRQNTTVDKPE+A +IEM+EPVSL+FALRYMNSFT+ATPLS TVTISLSSELPVVVEYK+AEMGYIR+YLAPKIEE+ED TKP+
Sbjct:  168 KFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSETVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEED-TKPE 264          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_BRANA (Proliferating cell nuclear antigen OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.047e-41
Identity = 82/94 (87.23%), Postives = 92/94 (97.87%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 306
            KFST GDIGTANIVLRQNTTVDKPE+A +IEM+EPVSL+FALRYMNSFT+ATPLS+TVTISLSSELPVVVEYK+AEMGYIR+YLAPKIEEDE++
Sbjct:  168 KFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEDEED 261          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA1_ARATH (Proliferating cellular nuclear antigen 1 OS=Arabidopsis thaliana GN=PCNA PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 5.956e-41
Identity = 82/93 (88.17%), Postives = 90/93 (96.77%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 303
            KFST GDIGTANIVLRQNTTVDKPE+A +IEM EPVSL+FALRYMNSFT+ATPLS+TVTISLSSELPVVVEYK+AEMGYIR+YLAPKIEE+ED
Sbjct:  168 KFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEEED 260          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_ORYSJ (Proliferating cell nuclear antigen OS=Oryza sativa subsp. japonica GN=Os02g0805200 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 2.956e-40
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 303
            KFST GDIGTANIV RQN TVDKPE+ATIIEM EPVSLTFALRYMNSFT+A+PLS  VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE+
Sbjct:  168 KFSTAGDIGTANIVCRQNKTVDKPEDATIIEMQEPVSLTFALRYMNSFTKASPLSEQVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEE 260          
The following BLAST results are available for this feature:
BLAST of CX299821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PCNA_TOBAC4.708e-4693.81Proliferating cell nuclear antigen OS=Nicotiana ta... [more]
PCNA_SOYBN8.031e-4689.90Proliferating cell nuclear antigen (Fragment) OS=G... [more]
PCNA1_DAUCA6.799e-4591.75Proliferating cell nuclear antigen OS=Daucus carot... [more]
PCNA_PEA1.282e-4386.73Proliferating cell nuclear antigen OS=Pisum sativu... [more]
PCNA_CATRO6.363e-4391.49Proliferating cell nuclear antigen OS=Catharanthus... [more]
PCNA_POPNI1.851e-4288.30Proliferating cell nuclear antigen OS=Populus nigr... [more]
PCNA2_ARATH7.036e-4286.73Proliferating cell nuclear antigen 2 OS=Arabidopsi... [more]
PCNA_BRANA2.047e-4187.23Proliferating cell nuclear antigen OS=Brassica nap... [more]
PCNA1_ARATH5.956e-4188.17Proliferating cellular nuclear antigen 1 OS=Arabid... [more]
PCNA_ORYSJ2.956e-4089.25Proliferating cell nuclear antigen OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC07002G12SK NTLeaf1 Citrus clementina cDNA clone C07002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299821 ID=CX299821; Name=CX299821; organism=Citrus clementina; type=EST; length=537bp
GCTGCAGGAATTCGGCCACGAGGGAAGTTCTCTACCAGAGGTGATATTGG
AACTGCTAATATTGTGCTCAGGCAAAATACTACAGTAGACAAGCCAGAAG
AAGCAACAATAATTGAAATGCATGAGCCAGTGTCATTGACTTTTGCTCTG
AGATACATGAATTCATTCACAAGGGCTACTCCACTGTCGAATACTGTTAC
TATCAGCCTATCCTCAGAATTGCCAGTTGTGGTCGAATACAAGATTGCTG
AGATGGGTTATATTAGATTCTACTTGGCACCCAAGATAGAAGAAGATGAG
GATGAGACCAAGCCTCAAGTTTAAGTGTCATTTGGCACGTAGGCTATGGC
ATTTTGTTGAATCAAGTTACTCCTATATTTTAAGTTTGCTTTTAGAATGT
TTCTCGTAAATCTTCATGTTGGAAAACCAAGCATTTGTAGTTCGGTAGAT
TGTTAAAAACTCCTTTCATGTGCTTGGCTTTTTTATCCTACTGTTGTACA
TGTAATCAATTCCTTTGTCAAAAAAAAAAAAAAAAAA
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