CX299839

Overview
NameCX299839
Unique NameCX299839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1171 contig Ccv1_Contig1171:344..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.483e-36
Identity = 70/107 (65.42%), Postives = 87/107 (81.31%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGTG 323
            PAASE+L V  G + AGFI+SS+NTVY +TL  GDIM+FPQGLLH+Q N+G   A+  V+F+ PNPGLQITD+ALFANNL S +VE+ TFLDDA VK+LK +LGG+G
Sbjct:  107 PAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFANNLPSAIVEKVTFLDDAQVKKLKSVLGGSG 213          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.232e-35
Identity = 73/106 (68.87%), Postives = 87/106 (82.08%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGT 320
            P ASE+LLVV G I AGF++S  NT Y+KTLKKGDIM+FPQGLLHFQVN G   AL F SF+SP+PGLQI DFALF N+L ++L+ QTTFLD A +K+LKG+LGGT
Sbjct:  104 PGASEVLLVVQGTIIAGFVASD-NTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKNDLPTELIAQTTFLDAAQIKKLKGVLGGT 208          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.043e-34
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGTG 323
            P ASE+L V+ G ITAGF+SS AN VYV+TLK G +M+FPQGLLHFQ+N+G   A   V+FNS NPGLQI DFALFAN+L ++LV  TTFLD  TVK+LKG+LGGTG
Sbjct:  103 PGASEVLFVLTGSITAGFVSS-ANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANSLPTELVVGTTFLDATTVKKLKGVLGGTG 208          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.324e-34
Identity = 73/106 (68.87%), Postives = 86/106 (81.13%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGT 320
            P ASE+L+V+ G I AGFISS AN VY+KTL +GD M+FPQGLLHFQ+NSG   AL FV+F S +PGLQI  FALFAN+L S+LVE TTFL DA VK+LKG+LGGT
Sbjct:  106 PGASEVLVVIQGTICAGFISS-ANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLPSELVEATTFLSDAEVKKLKGVLGGT 210          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.177e-34
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGTG 323
            P ASE+L V+ G ITAGFISS AN+VYV+TLK G +M+FPQGLLHFQ+N+G   A   V+F+S +PGLQI DFALFAN LS++LV  TTFL  ATVK LKG+LGGTG
Sbjct:  102 PGASEVLFVLDGSITAGFISS-ANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGLQILDFALFANTLSTELVSATTFLPPATVKTLKGVLGGTG 207          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.831e-34
Identity = 72/106 (67.92%), Postives = 85/106 (80.19%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGT 320
            P ASE+L+V+ G I AGFISS AN VY+KTL +GD M+FPQGLLHFQ+NSG   AL FV+F S +PGLQI  FALFAN+L S+LVE TTFL D  VK+LKG+LGGT
Sbjct:  106 PGASEVLVVIQGTICAGFISS-ANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLPSELVEATTFLSDEEVKKLKGVLGGT 210          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.831e-34
Identity = 69/106 (65.09%), Postives = 86/106 (81.13%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGT 320
            P ASE+LLVV G I AGF++S  NT Y+KTLKKGDI++FPQGLLHFQVN G   A+ F SF+SP+PGLQI DFALF N+L+++L+ QTT LD   +K+LKG+LGGT
Sbjct:  104 PGASEVLLVVQGTIIAGFVASD-NTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALFKNDLATELIAQTTLLDAPQIKKLKGVLGGT 208          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.275e-32
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGT 320
            P ASE+L+V  G I AGF++S  NT Y++TL+KGDIM+FPQGLLHFQVN G   AL F SF S +PGLQI DFALF N+L ++++ QTTFLD A +K+LKG+LGGT
Sbjct:  109 PGASEVLIVAQGTICAGFVASD-NTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALFKNDLPTEVIAQTTFLDAAQIKKLKGVLGGT 213          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.241e-28
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILGGTG 323
            PA SE+L V+ G + AGFISSS N VY K + KG + +FPQGLLHFQ N+G   A+ F +++S NPGLQI D+ALFANNL +  V + TFL +A V+RLK   GG+G
Sbjct:  113 PAGSELLYVLDGALVAGFISSSDNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFANNLPTSYVVKGTFLAEAEVRRLKSKFGGSG 219          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.976e-17
Identity = 55/107 (51.40%), Postives = 64/107 (59.81%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFA-LFANNLSSQLVEQTTFLDDATVKRLKGILGGT 320
            P ASEIL VV G I A FISS  N VY K L  GD+M+FPQGLL FQ  +G   A G       NPGLQI +F   F      + +  TT LD+AT+K+LK  LGGT
Sbjct:  109 PGASEILNVVEGTILAAFISSG-NKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQRNPGLQILEFQHCFPTIFPPKTIAGTTCLDEATIKKLKSGLGGT 213          
The following BLAST results are available for this feature:
BLAST of CX299839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GL814_ORYSJ2.483e-3665.42Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
AB19A_PRUPE1.232e-3568.87Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL31_ARATH1.043e-3467.29Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
GL33_ARATH2.324e-3468.87Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GLP1_BRANA5.177e-3467.29Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GLP1_SINAL8.831e-3467.92Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
AB19B_PRUPE8.831e-3465.09Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
ABP20_PRUPE1.275e-3263.21Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL813_ORYSJ7.241e-2856.07Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GLP1_IPONI1.976e-1751.40Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC07003A11SK NTLeaf1 Citrus clementina cDNA clone C07003A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299839 ID=CX299839; Name=CX299839; organism=Citrus clementina; type=EST; length=431bp
ATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCATAACTGCC
GGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCTTAAGAA
GGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAGTAAATT
CCGGCGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCGAATCCT
GGACTCCAAATCACCGATTTCGCCTTATTTGCCAACAACTTGTCTTCCCA
ATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGAGGCTCA
AGGGTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACATTCTTCA
TTTGTAGTTTTGAGTTCTTAATTTCATTTAGTTGCTAATGTATTTGATTG
TTGGAATTCACGAGTTAGTATTTTCTCTGTT
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