CX299840
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1_CHLRE (Ribosome biogenesis protein BOP1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_111274 PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12 Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1 Query: 4 NPLIVPLEILRG-HTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 144 NPLIVP++ILRG HT + GV DC FHP QPW+FTAGADS I LYC+ Sbjct: 750 NPLIVPVKILRGGHTVTASEGVADCAFHPTQPWIFTAGADSKILLYCN 797
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1_DICDI (Ribosome biogenesis protein BOP1 homolog OS=Dictyostelium discoideum GN=DDB_G0281839 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.509e-11 Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 Query: 1 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138 QN LIVPL+IL+ H S N GV+D FHP+QPW+F++GADS IRLY Sbjct: 786 QNALIVPLKILKTHESINDLGVLDIVFHPKQPWIFSSGADSTIRLY 831
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1_DANRE (Ribosome biogenesis protein bop1 OS=Danio rerio GN=bop1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.509e-11 Identity = 27/46 (58.70%), Postives = 39/46 (84.78%), Query Frame = 1 Query: 1 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138 QNPLIVP+++L+GH+ ++ GV+D FHP QPW+F++GAD+ IRLY Sbjct: 731 QNPLIVPVKVLKGHSITHDLGVLDVTFHPTQPWVFSSGADATIRLY 776
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1_MONBE (Ribosome biogenesis protein BOP1 homolog OS=Monosiga brevicollis GN=37129 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11 Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1 Query: 1 QNPLIVPLEILRGHT-SSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138 QNPLIVP++I++ H +S+G GVMDC FHP QPWLF+AG+D I+L+ Sbjct: 752 QNPLIVPVKIIKAHNQTSDGMGVMDCTFHPSQPWLFSAGSDGSIKLH 798
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1_XENTR (Ribosome biogenesis protein bop1 OS=Xenopus tropicalis GN=bop1 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.361e-11 Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 Query: 1 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138 QNPLIVP+++LRGH GV+D FHP QPW+F++GAD+ IRLY Sbjct: 683 QNPLIVPVKVLRGHAIHRDLGVLDVIFHPTQPWVFSSGADATIRLY 728
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1_MOUSE (Ribosome biogenesis protein BOP1 OS=Mus musculus GN=Bop1 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11 Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 1 Query: 1 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138 QNPL+VP+++L+GHT + GV+D FHP QPW+F++GAD IRL+ Sbjct: 686 QNPLLVPVKVLKGHTLTRDLGVLDVAFHPTQPWVFSSGADGTIRLF 731
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1A_XENLA (Ribosome biogenesis protein bop1-A OS=Xenopus laevis GN=bop1-A PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11 Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1 Query: 1 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138 QNPLIVP+++LRGH GV+D FHP QPW+F++GAD+ IRL+ Sbjct: 682 QNPLIVPVKVLRGHAIHRDLGVLDVTFHPTQPWVFSSGADATIRLF 727
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1B_XENLA (Ribosome biogenesis protein bop1-B OS=Xenopus laevis GN=bop1-B PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11 Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 Query: 1 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138 QNPLIVP+++LRGH GV+D FHP QPW+F++GAD IRL+ Sbjct: 682 QNPLIVPVKVLRGHAIHRDLGVLDVMFHPTQPWVFSSGADGTIRLF 727 The following BLAST results are available for this feature:
BLAST of CX299840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX299840 ID=CX299840; Name=CX299840; organism=Citrus clementina; type=EST; length=388bpback to top |