CX299840

Overview
NameCX299840
Unique NameCX299840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length388
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1_CHLRE (Ribosome biogenesis protein BOP1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_111274 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    4 NPLIVPLEILRG-HTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 144
            NPLIVP++ILRG HT +   GV DC FHP QPW+FTAGADS I LYC+
Sbjct:  750 NPLIVPVKILRGGHTVTASEGVADCAFHPTQPWIFTAGADSKILLYCN 797          
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1_DICDI (Ribosome biogenesis protein BOP1 homolog OS=Dictyostelium discoideum GN=DDB_G0281839 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.509e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138
            QN LIVPL+IL+ H S N  GV+D  FHP+QPW+F++GADS IRLY
Sbjct:  786 QNALIVPLKILKTHESINDLGVLDIVFHPKQPWIFSSGADSTIRLY 831          
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1_DANRE (Ribosome biogenesis protein bop1 OS=Danio rerio GN=bop1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.509e-11
Identity = 27/46 (58.70%), Postives = 39/46 (84.78%), Query Frame = 1
Query:    1 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138
            QNPLIVP+++L+GH+ ++  GV+D  FHP QPW+F++GAD+ IRLY
Sbjct:  731 QNPLIVPVKVLKGHSITHDLGVLDVTFHPTQPWVFSSGADATIRLY 776          
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1_MONBE (Ribosome biogenesis protein BOP1 homolog OS=Monosiga brevicollis GN=37129 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 QNPLIVPLEILRGHT-SSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138
            QNPLIVP++I++ H  +S+G GVMDC FHP QPWLF+AG+D  I+L+
Sbjct:  752 QNPLIVPVKIIKAHNQTSDGMGVMDCTFHPSQPWLFSAGSDGSIKLH 798          
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1_XENTR (Ribosome biogenesis protein bop1 OS=Xenopus tropicalis GN=bop1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.361e-11
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138
            QNPLIVP+++LRGH      GV+D  FHP QPW+F++GAD+ IRLY
Sbjct:  683 QNPLIVPVKVLRGHAIHRDLGVLDVIFHPTQPWVFSSGADATIRLY 728          
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1_MOUSE (Ribosome biogenesis protein BOP1 OS=Mus musculus GN=Bop1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138
            QNPL+VP+++L+GHT +   GV+D  FHP QPW+F++GAD  IRL+
Sbjct:  686 QNPLLVPVKVLKGHTLTRDLGVLDVAFHPTQPWVFSSGADGTIRLF 731          
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1A_XENLA (Ribosome biogenesis protein bop1-A OS=Xenopus laevis GN=bop1-A PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138
            QNPLIVP+++LRGH      GV+D  FHP QPW+F++GAD+ IRL+
Sbjct:  682 QNPLIVPVKVLRGHAIHRDLGVLDVTFHPTQPWVFSSGADATIRLF 727          
BLAST of CX299840 vs. ExPASy Swiss-Prot
Match: BOP1B_XENLA (Ribosome biogenesis protein bop1-B OS=Xenopus laevis GN=bop1-B PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    1 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 138
            QNPLIVP+++LRGH      GV+D  FHP QPW+F++GAD  IRL+
Sbjct:  682 QNPLIVPVKVLRGHAIHRDLGVLDVMFHPTQPWVFSSGADGTIRLF 727          
The following BLAST results are available for this feature:
BLAST of CX299840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BOP1_CHLRE1.045e-1268.75Ribosome biogenesis protein BOP1 homolog OS=Chlamy... [more]
BOP1_DICDI1.509e-1165.22Ribosome biogenesis protein BOP1 homolog OS=Dictyo... [more]
BOP1_DANRE1.509e-1158.70Ribosome biogenesis protein bop1 OS=Danio rerio GN... [more]
BOP1_MONBE1.970e-1161.70Ribosome biogenesis protein BOP1 homolog OS=Monosi... [more]
BOP1_XENTR3.361e-1160.87Ribosome biogenesis protein bop1 OS=Xenopus tropic... [more]
BOP1_MOUSE4.390e-1156.52Ribosome biogenesis protein BOP1 OS=Mus musculus G... [more]
BOP1A_XENLA5.733e-1158.70Ribosome biogenesis protein bop1-A OS=Xenopus laev... [more]
BOP1B_XENLA7.488e-1158.70Ribosome biogenesis protein bop1-B OS=Xenopus laev... [more]
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Properties
Property NameValue
Genbank descriptionC07003A12SK NTLeaf1 Citrus clementina cDNA clone C07003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299840 ID=CX299840; Name=CX299840; organism=Citrus clementina; type=EST; length=388bp
CAGAATCCTCTTATAGTTCCCCTTGAGATTCTTCGAGGGCATACAAGCTC
GAATGGGAGAGGTGTTATGGATTGTAAGTTCCATCCAAGACAGCCCTGGT
TATTTACCGCAGGTGCTGATTCAGTGATTCGGCTTTATTGCCACTAAAAT
TATTTGAAGAAGAAAGCAGATGTATCTTTGTGCACTGATTTTGAAAAATT
GCATACTCTGCTGATGAAAAGAAAATTCATTTCACCCCAGAAAGAAACTG
AAATTTTGTACTTAAAAGAGTAAAAATTATCTGCAGATGTTATAGATGGA
GCCAAGGGAGGACATAAGAGAGATTGGTTTTTGTACTGTAAAGAAAGTTT
GAACCAGAGAGATGGTATCACTAATCTTAGCTTGATTA
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