CX299843

Overview
NameCX299843
Unique NameCX299843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig812 contig Ccv1_Contig812:1..445. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299843 vs. ExPASy Swiss-Prot
Match: CP12_CHLRE (Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii GN=cp12 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.923e-16
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 3 
Query:  228 ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKD----SDPLEAYCKDNPETDECRTYED 437
            +++KV+ ++K AE+AC     S +CA AWD VEELSAA SH ++  K     +DPLEA+CKD P+ DECR YED
Sbjct:    8 LNKKVQDAVKEAEDAC-AKGTSADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 80
The following BLAST results are available for this feature:
BLAST of CX299843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CP12_CHLRE8.923e-1652.70Calvin cycle protein CP12 OS=Chlamydomonas reinhar... [more]
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Properties
Property NameValue
Genbank descriptionC07003B04SK NTLeaf1 Citrus clementina cDNA clone C07003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299843 ID=CX299843; Name=CX299843; organism=Citrus clementina; type=EST; length=445bp
ATTACCAAAGCCAAAACAACAAAATAGAAGAAGAGCAAGAGGCGAGAATG
GCAACAATAGCCGGTGTCAATCTCTCAACTCCCAGCGTCTTTGCCAAAAT
CACAGACCCGAAGTCAAAGGTTCAACCCAGCAGGTCTCTGTGGCTCAACA
ACCCATCAAGGAAAAGGCCCGCTCAGTTTAGAACAGGGCGCATGCACATG
CAACCCCTGAGAGCTGCTCCCGATAGAATCTCAGAGAAGGTGGAGCAAAG
CATCAAGAGTGCAGAGGAGGCGTGCGAGGGGGACCCTGCTAGTGGCGAGT
GTGCTGCTGCATGGGACGAGGTGGAGGAGCTGAGTGCCGCGGCCAGCCAT
GCTAGAGAGAGGAAGAAGGATTCCGATCCTTTGGAGGCTTACTGTAAGGA
CAACCCAGAGACCGATGAGTGCCGCACTTATGAAGATTGATAACA
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