CX299850

Overview
NameCX299850
Unique NameCX299850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299850 vs. ExPASy Swiss-Prot
Match: MYCBP_PONAB (C-Myc-binding protein OS=Pongo abelii GN=MYCBP PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.065e-12
Identity = 38/90 (42.22%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   76 FRKYLDSSGVLDALTKVLVALYEQNDKPSSALEFVQQKLGA--PSVSEYEKLQAEMSDLQLKYNELLAAHQENCKELEELKNSQKTASTE 339
            FR+YL+ SGVLD LTKVLVALYE+ +KP+SAL+F++  LGA  P   E E L+ E+++++ KY  ++  +++   +L + +  Q+    E
Sbjct:   14 FRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEIKEKYEAIVEENKKLKAKLAQYEPPQEEKRAE 103          
BLAST of CX299850 vs. ExPASy Swiss-Prot
Match: MYCBP_HUMAN (C-Myc-binding protein OS=Homo sapiens GN=MYCBP PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.065e-12
Identity = 38/90 (42.22%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   76 FRKYLDSSGVLDALTKVLVALYEQNDKPSSALEFVQQKLGA--PSVSEYEKLQAEMSDLQLKYNELLAAHQENCKELEELKNSQKTASTE 339
            FR+YL+ SGVLD LTKVLVALYE+ +KP+SAL+F++  LGA  P   E E L+ E+++++ KY  ++  +++   +L + +  Q+    E
Sbjct:   14 FRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEKRAE 103          
BLAST of CX299850 vs. ExPASy Swiss-Prot
Match: MYCBP_BOVIN (C-Myc-binding protein OS=Bos taurus GN=MYCBP PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.065e-12
Identity = 38/90 (42.22%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   76 FRKYLDSSGVLDALTKVLVALYEQNDKPSSALEFVQQKLGA--PSVSEYEKLQAEMSDLQLKYNELLAAHQENCKELEELKNSQKTASTE 339
            FR+YL+ SGVLD LTKVLVALYE+ +KP+SAL+F++  LGA  P   E E L+ E+++++ KY  ++  +++   +L + +  Q+    E
Sbjct:   14 FRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKTKLAQYEPPQEEKRAE 103          
BLAST of CX299850 vs. ExPASy Swiss-Prot
Match: MYCBP_MOUSE (C-Myc-binding protein OS=Mus musculus GN=Mycbp PE=2 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 37/90 (41.11%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   76 FRKYLDSSGVLDALTKVLVALYEQNDKPSSALEFVQQKLGA--PSVSEYEKLQAEMSDLQLKYNELLAAHQENCKELEELKNSQKTASTE 339
            FR+YL+ SGVLD LTKVLVALYE+ +KP+SAL+F++  LGA  P   E E ++ E+++++ KY   +  +++   +L + +  Q+    E
Sbjct:   14 FRRYLEKSGVLDTLTKVLVALYEEPEKPTSALDFLKHHLGAATPENPEIELVRLELAEMKEKYEATVEENKKLKAKLVQYEPPQEEKRAE 103          
BLAST of CX299850 vs. ExPASy Swiss-Prot
Match: MYCBP_DICDI (C-Myc-binding protein homolog OS=Dictyostelium discoideum GN=mycbp PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   76 FRKYLDSSGVLDALTKVLVALYEQNDKPSSALEFVQQKLGAPSVSEYEKLQAEMSDLQLKYNELLAAHQENCKELE 303
            F+ YL+ SGV+DALTKVLV LYE++DKPS ALEF+++ LG     + + L+ E +DL+ + + L     +  K+LE
Sbjct:   10 FKGYLEKSGVIDALTKVLVGLYEESDKPSDALEFIKKHLGNSLGIDVDALKQENADLKAEVSALTQRVDDLSKKLE 85          
The following BLAST results are available for this feature:
BLAST of CX299850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MYCBP_PONAB2.065e-1242.22C-Myc-binding protein OS=Pongo abelii GN=MYCBP PE=... [more]
MYCBP_HUMAN2.065e-1242.22C-Myc-binding protein OS=Homo sapiens GN=MYCBP PE=... [more]
MYCBP_BOVIN2.065e-1242.22C-Myc-binding protein OS=Bos taurus GN=MYCBP PE=3 ... [more]
MYCBP_MOUSE1.339e-1141.11C-Myc-binding protein OS=Mus musculus GN=Mycbp PE=... [more]
MYCBP_DICDI2.982e-1146.05C-Myc-binding protein homolog OS=Dictyostelium dis... [more]
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Properties
Property NameValue
Genbank descriptionC07003B11SK NTLeaf1 Citrus clementina cDNA clone C07003B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299850 ID=CX299850; Name=CX299850; organism=Citrus clementina; type=EST; length=620bp
GAAGAGCACAGGAATAAGATTAGAGAGCAGATGATGATGCGATACAAAGA
GGAAAAAGAAGCCAAAAAGGAAGCTTTCAGGAAGTACTTAGATTCTAGTG
GCGTTCTTGATGCACTCACCAAAGTTCTTGTTGCATTGTATGAGCAAAAT
GACAAGCCTTCTTCTGCTCTTGAGTTTGTTCAACAGAAATTAGGAGCTCC
TAGTGTCTCTGAATATGAGAAGCTGCAAGCTGAAATGTCAGATTTGCAAT
TGAAATATAATGAGCTTTTGGCTGCACATCAAGAAAATTGCAAAGAGTTA
GAGGAACTTAAGAATTCACAGAAAACGGCATCTACCGAAGAGAATAATGA
TGCTGAGGCGCCAAAGGATGAGCCCTAGAGGTCCTTCTGAAGAACTCGTG
TTTTATAATGTTGTAATAACTTGATTTTTTTTTAATGGAAAATATGAAAT
GTCAAACGATTGTTCCCAGATTGTTGTACCCACTGAATAGAGTGTGCATT
AGAACTTCTGAATGTATATTGGTGTTTCTTCGACATTAACGGATCATTTG
TTGAGTTTATGTCATTGCATCTGTAATAATATGTTATGTTAATGCAAAAG
AAAAAAAAAAAAAAAAAACT
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