CX299851

Overview
NameCX299851
Unique NameCX299851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10221 contig Ccv1_Contig10221:438..939. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA4_ARATH (ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 3.480e-58
Identity = 114/153 (74.51%), Postives = 120/153 (78.43%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTH--ELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L+ATLIAVYANWSF               LYNIIFYIPLDF+KFFIRYALSG+AWDLVIEQR+AFTRQKDFGKEQRELQWAHAQRTLHGLQ PDTKMFT+RTH  ELNQM               LHTLKGHVESVVRLKGLDI+TIQQAYTV
Sbjct:  808 LVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDTKMFTDRTHVSELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 960          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA11_ARATH (ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=AHA11 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.601e-55
Identity = 109/153 (71.24%), Postives = 116/153 (75.82%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTH--ELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L+ATLIAVYANWSF               LYNI+FYIPLD +KF IRYALSG+AWDLVIEQR+AFTRQKDFGKEQRELQWAHAQRTLHGLQ PD KMF ERTH  EL+QM               LHTLKGHVESVVRLKGLDI+TIQQAYTV
Sbjct:  804 LVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVFYIPLDIIKFLIRYALSGRAWDLVIEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFPERTHFNELSQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 956          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA1_NICPL (Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 7.508e-53
Identity = 103/153 (67.32%), Postives = 117/153 (76.47%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERT--HELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L+ATLIAVYANWSF               +YN++FYIPLD +KFFIRYALSG+AWDLV E+RIAFTR+KDFGKEQRELQWAHAQRTLHGLQ PDTK+F+E T  +ELNQ+               LHTLKGHVESVV+LKGLDI+TIQQAYTV
Sbjct:  805 LVATLIAVYANWSFAAIEGIGWGWAGVIWIYNLVFYIPLDIIKFFIRYALSGRAWDLVFERRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDTKLFSEATNFNELNQLAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIETIQQAYTV 957          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA3_NICPL (Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 6.356e-52
Identity = 105/153 (68.63%), Postives = 114/153 (74.51%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERT--HELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L+ATLIAVYANWSF               LYNI+FYIPLD   F IRYALSGKAWDLVIEQRIAFTR+KDFGKEQRELQWAHAQRTLHGLQ PD K+F+E T  +ELNQ+               LHTLKGHVESVV+LKGLDI+TIQQAYTV
Sbjct:  804 LVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVFYIPLDLXXFLIRYALSGKAWDLVIEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDPKIFSETTNFNELNQLAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIETIQQAYTV 956          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA2_SOLLC (Plasma membrane ATPase 2 (Fragment) OS=Solanum lycopersicum GN=LHA2 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 5.381e-51
Identity = 100/153 (65.36%), Postives = 115/153 (75.16%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERT--HELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L+ATLIAVYA+WSF               LYN++FY PLD +KF IRYALSG+AWDLV+EQRIAFTR+KDFGKEQRELQWAHAQRTLHGLQ PD K+F+E T  +ELNQ+               LHTLKGHVESVV+LKGLDI+TIQQ+YTV
Sbjct:  552 LVATLIAVYASWSFAAIEGIGWGWAGVIWLYNLVFYFPLDIIKFLIRYALSGRAWDLVLEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDIKLFSEATNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYTV 704          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA1_SOLLC (Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 9.178e-51
Identity = 102/153 (66.67%), Postives = 114/153 (74.51%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERT--HELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L+ATLIAVYANWSF               LYNI+ YIPLD +KF IRYALSGKAWDLV+EQRIAFTR+KDFGKE RELQWAHAQRTLHGLQ PD K+F+E T  +ELNQ+               LHTLKGHVESVV+LKGLDI+TIQQ+YTV
Sbjct:  804 LVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVTYIPLDLIKFLIRYALSGKAWDLVLEQRIAFTRKKDFGKELRELQWAHAQRTLHGLQVPDPKIFSETTNFNELNQLAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIETIQQSYTV 956          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA8_ARATH (ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=AHA8 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.959e-41
Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L+ATLIAVYANW F               +Y+II YIPLD +KF IRYAL+GKAWD +I Q+ AFT +KD+GK +RE QWA AQRTLHGL PP+  MF +  +EL+++               LHTLKGHVESVV+LKGLDIDTIQQ YTV
Sbjct:  799 LVATLIAVYANWGFARIVGCGWGWAGGIWVYSIITYIPLDILKFIIRYALTGKAWDNMINQKTAFTTKKDYGKGEREAQWALAQRTLHGLPPPEA-MFNDNKNELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 948          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA4_NICPL (Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.865e-41
Identity = 86/154 (55.84%), Postives = 107/154 (69.48%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPD-TKMFTERT--HELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L+ATLIAVYANW+F               LY+IIFY+PLD +KF IRY LSGKAW+ +++ + AFT +KD+GKE+RE QWA AQRTLHGLQPP+ T +F E+    EL+++               LHTLKGHVESVV+LKGLDI+TIQQ YTV
Sbjct:  799 LVATLIAVYANWAFARVKGCGWGWAGVIWLYSIIFYLPLDIMKFAIRYILSGKAWNNLLDNKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPEATNLFNEKNSYRELSEIAEQAKRRAEMARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 952          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA1_ORYSJ (Plasma membrane ATPase OS=Oryza sativa subsp. japonica GN=Os04g0656100 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 9.520e-40
Identity = 82/156 (52.56%), Postives = 105/156 (67.31%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPD---TKMFTERT--HELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L+AT +AVYANW F               LY+I+FY PLD  KFFIR+ LSG+AWD ++E +IAFT +KD+G+E+RE QWA AQRTLHGLQPP+     +F +++   EL+++               L+TLKGHVESVV+LKGLDIDTIQQ YTV
Sbjct:  796 LVATFLAVYANWGFARIKGIGWGWAGVIWLYSIVFYFPLDIFKFFIRFVLSGRAWDNLLENKIAFTTKKDYGREEREAQWATAQRTLHGLQPPEVASNTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQNYTV 951          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA9_ARATH (ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 3.618e-39
Identity = 84/154 (54.55%), Postives = 103/154 (66.88%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTK-MFTERT--HELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            LIATLIAVYANW+F               LY+I+FYIPLD +KF IRY+LSG+AWD VIE + AFT +KD+GK +RE QWA AQRTLHGLQP  T  MF +++   EL+++                HTLKGHVESVV+ KGLDI+ IQQ YT+
Sbjct:  801 LIATLIAVYANWNFARIRGIGWGWAGVIWLYSIVFYIPLDILKFIIRYSLSGRAWDNVIENKTAFTSKKDYGKGEREAQWAQAQRTLHGLQPAQTSDMFNDKSTYRELSEIADQAKRRAEVARLRERHTLKGHVESVVKQKGLDIEAIQQHYTL 954          
The following BLAST results are available for this feature:
BLAST of CX299851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PMA4_ARATH3.480e-5874.51ATPase 4, plasma membrane-type OS=Arabidopsis thal... [more]
PMA11_ARATH3.601e-5571.24ATPase 11, plasma membrane-type OS=Arabidopsis tha... [more]
PMA1_NICPL7.508e-5367.32Plasma membrane ATPase 1 OS=Nicotiana plumbaginifo... [more]
PMA3_NICPL6.356e-5268.63Plasma membrane ATPase 3 OS=Nicotiana plumbaginifo... [more]
PMA2_SOLLC5.381e-5165.36Plasma membrane ATPase 2 (Fragment) OS=Solanum lyc... [more]
PMA1_SOLLC9.178e-5166.67Plasma membrane ATPase 1 OS=Solanum lycopersicum G... [more]
PMA8_ARATH2.959e-4156.95ATPase 8, plasma membrane-type OS=Arabidopsis thal... [more]
PMA4_NICPL3.865e-4155.84Plasma membrane ATPase 4 OS=Nicotiana plumbaginifo... [more]
PMA1_ORYSJ9.520e-4052.56Plasma membrane ATPase OS=Oryza sativa subsp. japo... [more]
PMA9_ARATH3.618e-3954.55ATPase 9, plasma membrane-type OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC07003B12SK NTLeaf1 Citrus clementina cDNA clone C07003B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299851 ID=CX299851; Name=CX299851; organism=Citrus clementina; type=EST; length=502bp
AACTGATTGCTACTCTGATTGCCGTTTATGCAAACTGGAGTTTTGCTGCA
ATTGAAGGGATTGGGTGGGGTTGGGCCGGTGTGGTCTGGCTTTACAACAT
CATCTTCTACATCCCACTTGATTTCGTTAAGTTCTTCATACGCTATGCTC
TGAGTGGGAAGGCCTGGGATCTTGTTATCGAGCAGAGGATTGCTTTCACA
AGGCAAAAGGATTTTGGTAAGGAACAACGTGAGCTTCAATGGGCACATGC
ACAAAGAACATTGCATGGGTTGCAACCACCTGATACCAAGATGTTCACCG
AGCGAACTCATGAACTTAATCAGATGGCTGAAGAAGCCAAAAGGAGAGCT
GAAATTGCTAGGTTAAGAGAACTCCATACGTTAAAAGGTCATGTGGAATC
AGTAGTGAGATTGAAAGGCCTTGACATAGACACGATTCAGCAAGCTTACA
CGGTCTAAGAGATCACCTATTGACGTAATCGTTATCTATTAAGAAACATT
TC
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