CX299856

Overview
NameCX299856
Unique NameCX299856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig813 contig Ccv1_Contig813:1..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299856 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.063e-21
Identity = 43/77 (55.84%), Postives = 60/77 (77.92%), Query Frame = 2 
Query:    2 GVAVGAGWQSIVAYVNIACYYLIGIPIGVVLGYLTHLEVKGVWTGMLIGTFVQTVVLIIITLKTDWDKQVMKARERV 232
            GVA+G+GWQ++VAYVN+  YY+IG+PIG VLG+ T L V G+W GM+ G  +QT+ LI++TLKT+W  +V  A +RV
Sbjct:  416 GVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRV 492
The following BLAST results are available for this feature:
BLAST of CX299856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH2.063e-2155.84Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC07003C05SK NTLeaf1 Citrus clementina cDNA clone C07003C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299856 ID=CX299856; Name=CX299856; organism=Citrus clementina; type=EST; length=505bp
CGGAGTTGCTGTCGGGGCTGGATGGCAGAGTATCGTAGCATATGTTAACA
TCGCTTGCTACTACCTGATTGGGATTCCTATCGGAGTCGTGCTTGGTTAT
TTAACCCATTTGGAAGTCAAAGGTGTTTGGACCGGAATGTTGATTGGAAC
TTTTGTTCAAACTGTAGTTCTTATCATCATCACTTTGAAAACGGACTGGG
ACAAACAGGTGATGAAGGCTCGCGAACGCGTGAACAAGTGGTTCATTCCC
GAATCACCGGAACAATCGCCTAACGAACAAGCAGATTTCACAGCTTGACA
TCAAACTTCTTCAATTTCCAAAATCTTTTTTGCTTGGTGTAAATCTTTTG
CCAATTAATTGCTTACAGTTTTGTTTTTGCTTTCAAGAGTACAATCAAGC
ATTCAATCTGCCTCATGGGACTTGATGTTCAACTACACTGCTCATGTAGA
TGGAGAATCAAAAATTGGAATTTCATTTTTTTGTTAAAAAAAAAAAAAAA
AAAAA
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